View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15313_low_1 (Length: 572)
Name: NF15313_low_1
Description: NF15313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15313_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 37 - 559
Target Start/End: Complemental strand, 54566151 - 54565627
Alignment:
| Q |
37 |
tagttagttatggattatcaagatgatactgatgtataaataagggatacaagtagtaacatgggattattcttttctaattttgttttgtttgtgtcat |
136 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
54566151 |
tagttagttatggattatcacgatgatactcatgtataaataaggaatacaagtagtaacatgagattattcttctctaattttgttttgtttgtgtcat |
54566052 |
T |
|
| Q |
137 |
cgtcaattgttatattgaaggattaaagtgtgattaggttagaaaaagcaaaagatagagaggaaaagggaagtcaaaagaagcagtaagcattaattga |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54566051 |
cgtcaattgttatattgaaggattaaagtgtgattaggttagaaaaagcaaaagatagagaggaaaagggaagtcaaaagaagcagtaagcattaattga |
54565952 |
T |
|
| Q |
237 |
ctaacggcgtcaacagagacacgacgaattactaacggaaagacaaacagcgtgtattactcctacaacctggtacgaacgagaaaagagaatcatatga |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54565951 |
ctaacggcgtcaacagagacacgacgaattactaacggaaaaacaaacagcgtgtattactcctacaacctggtacgaacgagaaaagagaatcatatga |
54565852 |
T |
|
| Q |
337 |
aaagttaggagaatgaacgagaaacacctgagtagtgagtgagtgagtcaatgttagtcaaacacac--acactctcacacataaaccgtggaaattcaa |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54565851 |
aaagttaggagaatgaacgagaaacacctgagtagtgagtgagtgagtcaatgttagtcaaacacacacacactctcacacataaaccgtggaaattcaa |
54565752 |
T |
|
| Q |
435 |
caaacactaaactcgtttagctttttgcattaatcgattaacnnnnnnngttctctttctctagaagcttctctttctgcgtctaagtttccatggctga |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54565751 |
caaacactaaactcgtttagctttttgcattaatcgattaacaaaaaaagttctctttctctagaagcttctctttctgcgtctaagtttccatggctga |
54565652 |
T |
|
| Q |
535 |
gcatcgcgtctctgaagctctccct |
559 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
54565651 |
gcatcgcgtctctgaagctctccct |
54565627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University