View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15313_low_3 (Length: 297)

Name: NF15313_low_3
Description: NF15313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15313_low_3
NF15313_low_3
[»] chr2 (1 HSPs)
chr2 (9-297)||(4672694-4672982)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 297
Target Start/End: Complemental strand, 4672982 - 4672694
Alignment:
Q  9 aattcaaccaattaaagttgattctttccaaagaaacacaaacaatcatgtttttacttatttttgtacgaagcagtccgtcacataaatatattaaaat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  4672982 aattcaaccaattaaagttgattctttccaaagaaacacaaacaatcatgttgttacttatttttgtacgaagcagtccgtcaaataaatatattaaaat 4672883  T
Q  109 tgaagggatatattaacgttgtcatctcattcgcgatcctactatatatgtctagcattatccaagatgtagtaaagaataaaccttcaaacgttgatca 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4672882 tgaagggatatattaacgttgtcatctcattcgcgatcctactatatatgtctagcattatccaagatgtagtaaagaataaaccttcaaacgttgataa 4672783  T
Q  209 atgacttctgtatcgctaaaaaatttgcacactaagagagatattttcatcgagaagaaagaaaaataggcatgctagaaataaaatat 297  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4672782 atgacttctgtttcgctaaaaaatttgcacactaagagagatattttcatcgagaagaaagaaaaataagcatgctagaaataaaatat 4672694  T

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