View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15313_low_5 (Length: 203)
Name: NF15313_low_5
Description: NF15313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15313_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 5321012 - 5320814
Alignment:
| Q |
1 |
gaacgtcgtagccccgctatatgaccaaaatgagtgaaatgatcccggcagccatcaagagcaacaaaagagagacgaaaccactgcaacaccgtgaacc |
100 |
Q |
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| T |
5321012 |
gaacgtcgtagccccgctatatgaccaaaatgagtgaaatgatcccggcagccatcaagagcaacaaaagagagacgaaaccactgcaacaccgtgaacc |
5320913 |
T |
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| Q |
101 |
acacgctgctaaaagtgtcgcagcgaaatagaaggtgatctgcggtctcttgtgaaccgcacccacccacgc------tgtcttccgcgatgatgatgt |
193 |
Q |
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| T |
5320912 |
acacgctgctaaaagtgtcgcaacgaaagagaaggtgatctgcggtctcttctgaaccgcacccacccacgcaaatattgtcttccgcgatgatgatgt |
5320814 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 20428137 - 20427966
Alignment:
| Q |
1 |
gaacgtcgtagccccgctatatgaccaaaatgagtgaaatgatcccggcagccatcaagagcaacaaaagagagacgaaaccactgcaacaccgtgaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20428137 |
gaacgtcgtagccccgctatatgaccaaaatgagtgaaatgatcccggcagccatcaagagcaacaaaagagagacgaaaccactgcaacaccgtgaacc |
20428038 |
T |
|
| Q |
101 |
acacgctgctaaaagtgtcgcagcgaaatagaaggtgatctgcggtctcttgtgaaccgcacccacccacgc |
172 |
Q |
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| T |
20428037 |
acacgctgctaaaagtgtcgcaacgaaagagaaggtgatccgcggtctcttgtgaaccgcacccacccacgc |
20427966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 34305211 - 34305279
Alignment:
| Q |
30 |
atgagtgaaatgatcccggcagccatcaagagcaacaaaagagagacgaaaccactgcaacaccgtgaa |
98 |
Q |
| |
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|||| |||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||| |||| |
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| T |
34305211 |
atgactgaaatgatcccggcagccaccaggagcaacaaaagagagatgaagccactgcaacaccatgaa |
34305279 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 27942423 - 27942566
Alignment:
| Q |
26 |
caaaatgagtgaaatgatcccggcagccatcaagagcaacaaaagagagacgaaaccactgcaacaccgtgaaccacacgctgctaaaagtgtcgcagcg |
125 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
27942423 |
caaaatgagtgaaatgatcccggcagccaccaggagcaacaaaagagagacgtaaccactgcaacaccgcgaaccacacgctgctaaaagtgtcgcaacg |
27942522 |
T |
|
| Q |
126 |
aaatagaaggtgatctgcggtctcttgtgaaccgcacccaccca |
169 |
Q |
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| T |
27942523 |
aaagagaaggtgatccgcggtcttttgtgaaccgcaccctccca |
27942566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 26022298 - 26022469
Alignment:
| Q |
1 |
gaacgtcgtagccccgctatatgaccaaaatgagtgaaatgatcccggcagccatcaagagcaacaaaagagagacgaaaccactgcaacaccgtgaacc |
100 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||| |||||||||||||||| ||| || |||||||| |||||||||||| | ||||||||| |||||| |
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| T |
26022298 |
gaacgtggtacccccgccatatgaccaaaatgactgaaatgatcccggcaaccaccaggagcaacataagagagacgaagctgatgcaacaccatgaacc |
26022397 |
T |
|
| Q |
101 |
acacgctgctaaaagtgtcgcagcgaaatagaaggtgatctgcggtctcttgtgaaccgcacccacccacgc |
172 |
Q |
| |
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||||||| |||||||||||||| ||||| |||||||||||||| ||||| || ||||||||||| ||||||| |
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| T |
26022398 |
acacgctactaaaagtgtcgcaacgaaagagaaggtgatctgcagtctcctgagaaccgcaccctcccacgc |
26022469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 32690608 - 32690460
Alignment:
| Q |
1 |
gaacgtcgtagccccgctatatgaccaaaatgagtgaaatgatcccggcagccatcaagagcaacaaaagagagacgaaaccactgcaacaccgtgaacc |
100 |
Q |
| |
|
|||||| ||| |||||| | ||| ||||| ||||||||||||||||| |||| | || ||||||||||||||||||| | |||||||||||||| | ||| |
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| T |
32690608 |
gaacgtggtaaccccgccagatggccaaagtgagtgaaatgatcccgacagctaccaggagcaacaaaagagagacgtagccactgcaacaccgcggacc |
32690509 |
T |
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| Q |
101 |
acacgctgctaaaagtgtcgcagcgaaatagaaggtgatctgcggtctc |
149 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||||||||| |||||||| |
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| T |
32690508 |
acacgctgctaaaagtgtcgcaacgaaagagaaggtgatccgcggtctc |
32690460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 45836505 - 45836615
Alignment:
| Q |
60 |
agcaacaaaagagagacgaaaccactgcaacaccgtgaaccacacgctgctaaaagtgtcgcagcgaaatagaaggtgatctgcggtctcttgtgaaccg |
159 |
Q |
| |
|
||||||||| ||||||| | ||| ||||||||| |||||||| | ||||||| | |||||| ||||| ||||||||||| |||||||| ||| ||| |
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| T |
45836505 |
agcaacaaaggagagacctagccaatgcaacaccacgaaccacatgatgctaaaggggtcgcaacgaaagagaaggtgatccgcggtctccaatgagccg |
45836604 |
T |
|
| Q |
160 |
cacccacccac |
170 |
Q |
| |
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||||| ||||| |
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| T |
45836605 |
caccctcccac |
45836615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 44276695 - 44276784
Alignment:
| Q |
81 |
ccactgcaacaccgtgaaccacacgctgctaaaagtgtcgcagcgaaatagaaggtgatctgcggtctcttgtgaaccgcacccacccac |
170 |
Q |
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||||||||| |||| |||||||||||| | |||||||||||||| ||||| ||||| || ||||||| | || |||||||||||||| |
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| T |
44276695 |
ccactgcaaaaccgcgaaccacacgcttccaaaagtgtcgcagctgaataggaggtggtccgcggtctttgaagagccgcacccacccac |
44276784 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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