View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15314_low_2 (Length: 414)
Name: NF15314_low_2
Description: NF15314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15314_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 7237507 - 7237285
Alignment:
| Q |
1 |
cttgttcttcaaagaggcatatacatgtgaatgataaattgatgccaaaatcagatagtgtgctaccatgtagcgggtgagtgcaaagtaacgtgatgat |
100 |
Q |
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| T |
7237507 |
cttgttcttcaaagaggca---acatgtgaatgataaagtgatgccaaaatcagatagtgtgctaccatgtagcgagtgagtgcaaagtaacgtgatgat |
7237411 |
T |
|
| Q |
101 |
gcatgaggtgaggtctattatttatagtgtggctctaaatgatattcatcttgttgttgtaatcttcatgcagaatttgtatcaactaaactcaatttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||||||| |
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| T |
7237410 |
gcatgaggtgaggtctattatttatagtgtggctctaaatgatattcatcttgttgtaatcttcttcatgcagaatttgtattaaataaactcaatttgt |
7237311 |
T |
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| Q |
201 |
tatggaaaattgaatatgagataact |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
7237310 |
tatggaaaattgaatatgagataact |
7237285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 239 - 397
Target Start/End: Complemental strand, 7237052 - 7236894
Alignment:
| Q |
239 |
acttatatcaactaaaattgattaaaaacgtgtgattttttccactttattgtatatatttggtacttcgggtttgagacggaagaatgatgatttttac |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7237052 |
acttatatcaactaaaattgattaaaaacgtgtgattttttccactttattgtatatatttggtacttcgggtttgagacggaagaatgatgatttttac |
7236953 |
T |
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| Q |
339 |
atctttttcttgttttcgaaggtaaatgattgatagaacattagaagaaagaaacaaag |
397 |
Q |
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| T |
7236952 |
atctttttcttgttttcgaaggtaaatgattgatagaaccttagaagaaagaaacaaag |
7236894 |
T |
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