View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15314_low_5 (Length: 278)
Name: NF15314_low_5
Description: NF15314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15314_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 92 - 267
Target Start/End: Complemental strand, 44311405 - 44311230
Alignment:
| Q |
92 |
atcattgttgtcaagaatctctatgattctaaatttaacatttttagaaaaattcatagcatgtgggttcaattttatgaaaaattgttgaattcgtttt |
191 |
Q |
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| T |
44311405 |
atcattgttgtcaagaatctctatgattctaaatttaacatttttagaaaaattcatagcatgtgggttcaattttatgaaaaattgttgaattcgtttt |
44311306 |
T |
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| Q |
192 |
ccattttttatctaaaactaaaactgatgagcgaataataggaacaaaattaagaaaggagagaagttgaaattga |
267 |
Q |
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| T |
44311305 |
ccattttttatctaaaactaaaactgatgagcgaataatagaaacaaaattaagaaaggagagaagttgaaattga |
44311230 |
T |
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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 44311728 - 44311654
Alignment:
| Q |
15 |
attattcttgggaatgttagttcatttcttcttttcttacaaatgcagacacaaagaataataatactacgtgaa |
89 |
Q |
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| T |
44311728 |
attattcttgggaatgttagttcatttcttcttttcttaaaaatgcagacacaacgaataataatactatgtgaa |
44311654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 18701528 - 18701454
Alignment:
| Q |
17 |
tattcttgggaatgttagttcatttc---ttcttttcttacaaatgcagacacaaagaataataatactacgtgaa |
89 |
Q |
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| T |
18701528 |
tattcttgagaatgtt-gttcatttcctgttcttttcttacaattgtagacacaacgaatagtaatactatgtgaa |
18701454 |
T |
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