View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_high_11 (Length: 389)
Name: NF15315_high_11
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 24 - 375
Target Start/End: Original strand, 3949420 - 3949771
Alignment:
| Q |
24 |
ggaagaataactagcagaaaatggtctaagaaagaagagatggaggtgggaccttccttgtgcctacccgtacccactactactcactcatggaccccac |
123 |
Q |
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| T |
3949420 |
ggaagaataaccagcggaaaatggtctaagaaagaagagatggaggtaggaccttccttgtgcctacccatacccactactactcactcatggaccccac |
3949519 |
T |
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| Q |
124 |
ataatagtgggcaagagattccaaattggcaaacatgaaagaaacccaacgcccacgttaaagggggagcatgtagatgcacccgtaattagagaggggg |
223 |
Q |
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| T |
3949520 |
ataatagtgggcaagagattccaaattggcaaacatgaaagaaacccaacgcccacgttaaagggggagcatgtagatgcacccgtaattagagaggggg |
3949619 |
T |
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| Q |
224 |
aaataaagctaccttaggaattaggaggggggacctaagcatcaaaaccaacccaattctacccatcaaaagctgacaacaatgcacccttaacaaatgt |
323 |
Q |
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| T |
3949620 |
aaataaagctaccttaggaattaggaggggggacctaagcatcaaaaccaacccaattctacccatcaaaagctgacaacaatgcacccttaacaaatgt |
3949719 |
T |
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| Q |
324 |
acagacaaagatctcacattctcactctccattttgagattgagtttatatt |
375 |
Q |
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| T |
3949720 |
acagacaaagatctcacattctcactctccattttgagattgagtttatatt |
3949771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 35199284 - 35199231
Alignment:
| Q |
135 |
caagagattccaaattggcaaacatgaaagaaacccaacgcccacgttaaaggg |
188 |
Q |
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| T |
35199284 |
caagagattccaatttagcaagcatgaaagaaacccaacgcgcacgttaaaggg |
35199231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 340
Target Start/End: Complemental strand, 35199179 - 35199091
Alignment:
| Q |
251 |
gggggacctaagcatcaaaaccaacccaattctacccatcaaaagctgacaacaatgcacccttaacaaatgtacagacaaagatctcac |
340 |
Q |
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| T |
35199179 |
gggggaccaaagcatcaaatccaagccaactgtacccatcaaaatgtgcccacaatgcaccctaaac-tatgtgcagacatagatctcac |
35199091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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