View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_high_13 (Length: 359)
Name: NF15315_high_13
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_high_13 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 9168144 - 9168486
Alignment:
| Q |
17 |
agtaacaagcttcacgcggcaaccaacattcaatttaacaactctaaagtccccagcaattgcataaatatagctgttattttcggagttcagtctacac |
116 |
Q |
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| T |
9168144 |
agtaacaagcttcacgcggcaaccaacattcaatttaacaactctaaagtccccagcaattgcataaatatagctgttattttcggagttcagtctacac |
9168243 |
T |
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| Q |
117 |
gtagatgtatccaaatacataggatcgttcttcagttgcttgttacagttcaagtatactacatgctccggcctagaataatcatggaatgcgtatggat |
216 |
Q |
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| T |
9168244 |
gtagatgtatccacatacataggatcgttcttcagttgcttgctacagttcaagtatactacatgctccggcctagaataatcatggaatgcgtatggat |
9168343 |
T |
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| Q |
217 |
cccccttgtactcgtaatgactgtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtgcaatcaccttcttctattccaggatcaac |
316 |
Q |
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| T |
9168344 |
cccccttgtactcgtaatgactgtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtgcaatcaccttcttctattccaggatcaac |
9168443 |
T |
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| Q |
317 |
tactctgattgtgtagtttttgtagttgattgatttcacatag |
359 |
Q |
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| T |
9168444 |
tactctgattgtgtagtttttgtagttgattgatttcacatag |
9168486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 9307253 - 9306908
Alignment:
| Q |
17 |
agtaacaagcttcacgcggcaaccaacattcaatttaacaactctaaagtccccagcaattgcataaatatagctgttattttcggagttcagtctacac |
116 |
Q |
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| T |
9307253 |
agtaacaatcttcacacggcaaccaacatttaattcaccaacactaaagtccctatcaattgcataaacatagctgttatttgcagagttgattctacac |
9307154 |
T |
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| Q |
117 |
gtagatgtatccaaatacataggatcgttcttcagttgcttgttacagttcaagtatactacatgctccggcctagaataa---tcatggaatgcgtatg |
213 |
Q |
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| T |
9307153 |
ggagatgtatccacgtacagaggatcgttcttcacttgattgctacagttcaagtatattacgtgctcaaccagagattgaccgttacccaattcatatg |
9307054 |
T |
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| Q |
214 |
gatcccccttgtactcgtaatgactgtaataacttgtgaaattggttgcggttaagaaatagcgaggaat---ggtgcaatcaccttcttctattccagg |
310 |
Q |
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| T |
9307053 |
gatccccgtggtaattataat---cgtaagaacttgtgaaattggctgcggttaagaaatagcgaggcatggaggagcaatcaccttcttgaattccaag |
9306957 |
T |
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| Q |
311 |
atcaactactctgattgtgtagtttttgtagttgattgatttcacatag |
359 |
Q |
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| T |
9306956 |
atcaactactctcattgagtagtttctgtagttgattgatttcacatag |
9306908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 236 - 357
Target Start/End: Complemental strand, 9475491 - 9475367
Alignment:
| Q |
236 |
actgtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtag |
332 |
Q |
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| T |
9475491 |
actgtaataacttgtgaaattggatttggttaagaaataacgaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtag |
9475392 |
T |
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| Q |
333 |
tttttgtagttgattgatttcacat |
357 |
Q |
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| T |
9475391 |
ttatcgtagttgattgacttcacat |
9475367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 287 - 359
Target Start/End: Original strand, 8924746 - 8924818
Alignment:
| Q |
287 |
gcaatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatag |
359 |
Q |
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| T |
8924746 |
gcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatag |
8924818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 8936363 - 8936459
Alignment:
| Q |
266 |
taagaaatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatag |
359 |
Q |
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| T |
8936363 |
taagtaatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatag |
8936459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 8945881 - 8945951
Alignment:
| Q |
287 |
gcaatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacat |
357 |
Q |
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| T |
8945881 |
gcaatcaccttcttttattccaggatcaactaaccgaattgtgtagttattgtagttgattgattttacat |
8945951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 271 - 359
Target Start/End: Original strand, 8959889 - 8959980
Alignment:
| Q |
271 |
aatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatag |
359 |
Q |
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| T |
8959889 |
aatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatag |
8959980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 347
Target Start/End: Original strand, 9335524 - 9335582
Alignment:
| Q |
289 |
aatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgatt |
347 |
Q |
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| T |
9335524 |
aatcaccttcttcaattcctggatcaactaaccgaattgtgtagtttatgtagttgatt |
9335582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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