View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_high_15 (Length: 350)
Name: NF15315_high_15
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 9e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 58 - 232
Target Start/End: Complemental strand, 45075668 - 45075494
Alignment:
| Q |
58 |
aattcaattgttccaacttcattaactaattagattctagtagatcggatcagcattgatggacattataaaaatgtcaatgcatagttgaagctgttac |
157 |
Q |
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| T |
45075668 |
aattcaattgttccaacttcattaactaattagattctagtagatcggatcagcattgatgggcattataaaaatgtcaatgcatagttgaagctgttac |
45075569 |
T |
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| Q |
158 |
actatctagatttttgtctttcatttgctatatttgtcaccctcatttttactaatattgtcatttttctaaaca |
232 |
Q |
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| T |
45075568 |
actatctagatttttgtctttcatttgctatatttgtcaccctcatttttactaatattgtcatttttctaaaca |
45075494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 45075741 - 45075697
Alignment:
| Q |
5 |
tgaacaaccttcatctctcttccaacttcaacaaacacaacaagg |
49 |
Q |
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| T |
45075741 |
tgaacaaccttcatctctcttccaacttcaacaaacacaacaagg |
45075697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 45075421 - 45075389
Alignment:
| Q |
305 |
cctcttccataatttgtattctaactattcttc |
337 |
Q |
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| T |
45075421 |
cctcttccataatttgtattctaactattcttc |
45075389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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