View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_high_19 (Length: 319)
Name: NF15315_high_19
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 24729989 - 24729800
Alignment:
| Q |
8 |
agcagagatgcatacagaacacacagcttcatgcattcaaattactgaaaaataaagaaacaattaat----ttttctggtgtttatccaatatggttct |
103 |
Q |
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| T |
24729989 |
agcacagatgcatacagaacacacagcttcatgcattcaaattactgaaaaataaagaaacaatcaacaaagttttctggtgtttatccaatatggtttt |
24729890 |
T |
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| Q |
104 |
gatacaatcaatgttcttgactagaagaaacaatctcaataaaattaaaaccttgaacgtcatcatgatcatgaacattggccattcaaagaaa |
197 |
Q |
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| T |
24729889 |
gatacaat----gttcttgactagaagaaacaatctcaataaaattaaaaccttgaacgtcatcatgatcatgaacattggccattcaaagaaa |
24729800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 186 - 305
Target Start/End: Complemental strand, 24729040 - 24728921
Alignment:
| Q |
186 |
cattcaaagaaacacaaaaaggaaaacagagtgataaacctcttatttactttcagcatttggaccaataacgaccatcctaattcctaagtgctttctc |
285 |
Q |
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| T |
24729040 |
cattcaaagaaacacaaaaaggaaaacagagtgataaacctcttatttactttcagcatttggaccaataacaaccatcctaattcctaactgctttctc |
24728941 |
T |
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| Q |
286 |
caagttactgacataaattc |
305 |
Q |
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| T |
24728940 |
caagttactgacataaattc |
24728921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 9634336 - 9634406
Alignment:
| Q |
87 |
ttatccaatatggttctgatacaatcaatgttcttgactagaagaaacaatctcaataaaattaaaaccttgaac |
161 |
Q |
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| T |
9634336 |
ttatccaatatggttctgatacaat----gttattgactataagaaacaatctgaataaaattaaaaccttgaac |
9634406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 9636946 - 9636980
Alignment:
| Q |
186 |
cattcaaagaaacacaaaaaggaaaacagagtgat |
220 |
Q |
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| T |
9636946 |
cattcaaagaaacacaaaaaggaaaacagagtgat |
9636980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 31572246 - 31572298
Alignment:
| Q |
6 |
ggagcagagatgcatacagaacacacagcttcatgcattcaaattactgaaaa |
58 |
Q |
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| T |
31572246 |
ggagcacagatgcatactgaacacacaacttcatgcattccaattattgaaaa |
31572298 |
T |
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