View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_high_25 (Length: 238)
Name: NF15315_high_25
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_high_25 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 47711112 - 47710883
Alignment:
| Q |
15 |
tcagaaactaaactact----ctttgcatagttatgcactcctacatcttcaataatgggaatattcac--tttctccaccataagagcattattgaaat |
108 |
Q |
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| T |
47711112 |
tcagaaactaaactactacatctttgcatagttatgcactcctacatcttcaataatgggaatattcacactttctccaccataagagcattattgaaat |
47711013 |
T |
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| Q |
109 |
cagaagaagatcaaggagctctttcattttcatgtggaaccaaaattgactgaaacagtaaacaattaacagcaattgctcccaacaagaaaagcaatct |
208 |
Q |
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| T |
47711012 |
cagaagaagatcaaggagctctttcattttcatatggaaccaaaattgactgaaacagtaaacaattaacagcaattgctcccaacaagaaaagcaatct |
47710913 |
T |
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| Q |
209 |
ttggtttcccattattatgattctttcgtt |
238 |
Q |
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||||||||||||||| |||||||||||||| |
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| T |
47710912 |
ttggtttcccattataatgattctttcgtt |
47710883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 84 - 220
Target Start/End: Complemental strand, 45772852 - 45772717
Alignment:
| Q |
84 |
tccaccataagagcattattgaaatcagaagaagatcaaggagctctttcattttcatgtggaaccaaaattgactgaaacagtaaacaattaacagcaa |
183 |
Q |
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|||||||||| |||||||| ||||||||||||||| |||||| ||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| |
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| T |
45772852 |
tccaccataacagcattatggaaatcagaagaagaccaaggaactctttcattttcgtatggaaccaaaattggttgaaacagtaaacaattaacagcaa |
45772753 |
T |
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| Q |
184 |
ttgctcccaacaagaaaagcaatctttggtttcccat |
220 |
Q |
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| T |
45772752 |
gtgct-ccaacaaaaaaagtaatatttggtttcccat |
45772717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 43305943 - 43306148
Alignment:
| Q |
15 |
tcagaaactaaactactctttgcatagttatgcactcctacatcttcaataatgggaatattcactttctccaccataagagcattattgaaatcagaag |
114 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43305943 |
tcagaaactaaactactctttgcatggttatgcattcctacatcttctataatgggagtattcactttctccaccataacagcattattgaaatcagaag |
43306042 |
T |
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| Q |
115 |
aagatcaaggagctctttcattttcatgtggaaccaaaattgactgaaacagtaaacaattaacagcaattgctcccaacaagaaaagcaatctttggtt |
214 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||| |||||||||||| ||||| ||||||||||| |
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| T |
43306043 |
aagaccaaggagctctttcattttcatatggaaccaaaattgattgaaatagtaaataattaacagcaagtgctcccaacaaaaaaagtaatctttggtt |
43306142 |
T |
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| Q |
215 |
tcccat |
220 |
Q |
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|||||| |
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| T |
43306143 |
tcccat |
43306148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 41828264 - 41828400
Alignment:
| Q |
84 |
tccaccataagagcattattgaaatcagaagaagatcaaggagctctttcattttcatgtggaaccaaaattgactgaaacagtaaacaattaacagcaa |
183 |
Q |
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|||||||||| | |||||| ||||||||||||||| ||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||| ||||| |
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| T |
41828264 |
tccaccataacaacattatggaaatcagaagaagaccaaggagctctttcatttttgtatggaaccaaaattggttgaaacaataaacaattaagagcaa |
41828363 |
T |
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| Q |
184 |
ttgctcccaacaagaaaagcaatctttggtttcccat |
220 |
Q |
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| T |
41828364 |
gtgctccaacaaaaaaaagtaatctttggtttcccat |
41828400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 32606547 - 32606622
Alignment:
| Q |
104 |
gaaatcagaagaagatcaaggagctctttcattttcatgtggaaccaaaattgactgaaacagtaaacaattaaca |
179 |
Q |
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| T |
32606547 |
gaaatcagaagaagatcaaggagctctttcattttcgtatggaaccaaaattgattgaaacagtaaacaattaaca |
32606622 |
T |
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