View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15315_high_28 (Length: 218)
Name: NF15315_high_28
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_high_28 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 8903077 - 8902861
Alignment:
| Q |
2 |
caaacatgcatgtggccgtagaattttctaaaaaatgtcaagaatctcaataatagaacgattacaaaggggacaagagcctctgttcaaccacagctcc |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8903077 |
caaacatgcatgtggccgtataattttctaaaaaatgtcaagaatctcaataatagaacgattacaaaggggacaagagcctctattcaaccacagctcc |
8902978 |
T |
|
| Q |
102 |
ctagaacaaaccctgcaaaaagtatgtccacatggaataaacgccgcacctttattcctccccatgcacacacaacacactgaatcattccccgccacag |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8902977 |
ctagaacaaaccctgcaaaaagtatgtccacatggaataaacgccgcacctttattcctccccatgcacacacaacacactgaatcattccccgccatag |
8902878 |
T |
|
| Q |
202 |
cgccaactttctcctcc |
218 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8902877 |
tgccaactttctcctcc |
8902861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 193
Target Start/End: Complemental strand, 55518688 - 55518528
Alignment:
| Q |
33 |
aaaatgtcaagaatctcaataatagaacgattacaaaggggacaagagcctctgttcaaccacagctccctagaacaaaccctgcaaaaagtatgtccac |
132 |
Q |
| |
|
||||| || |||||||| | ||||||||||||||||||||||||| |||| ||||||||||| ||||| ||||| || ||||||||||| ||||||| |
|
|
| T |
55518688 |
aaaatatcgagaatctcgagaatagaacgattacaaaggggacaatttcctcgattcaaccacagttcccttgaacacactctgcaaaaagtgtgtccac |
55518589 |
T |
|
| Q |
133 |
atggaataaacgccgcacctttattcctccccatgcacacacaacacactgaatcattccc |
193 |
Q |
| |
|
| || || ||||| |||||||| || || ||||||||||| || ||||| |||||| |||| |
|
|
| T |
55518588 |
acggtatgaacgctgcacctttctttcttcccatgcacacgcagcacaccgaatcactccc |
55518528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 4176067 - 4175985
Alignment:
| Q |
96 |
agctccctagaacaaaccctgcaaaaagtatgtccacatggaataaacgccgcacctttattcctccccatgcacacacaaca |
178 |
Q |
| |
|
||||| || ||||| | ||||||||| || ||||||||||| |||||||| |||||||||| |||| |||| ||||| ||||| |
|
|
| T |
4176067 |
agctctcttgaacacatcctgcaaaacgtgtgtccacatggtataaacgctgcacctttatccctcaccatacacacgcaaca |
4175985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University