View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15315_high_29 (Length: 214)
Name: NF15315_high_29
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_high_29 |
 | |
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| [»] chr2 (4 HSPs) |
| |
|
| [»] chr5 (4 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr3 (7 HSPs) |
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| [»] chr1 (7 HSPs) |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 11524066 - 11524279
Alignment:
| Q |
1 |
tggggactagctaggagtatggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttcaaaccaagaac |
100 |
Q |
| |
|
|||| ||||| |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11524066 |
tgggaactagttaggagtatggcctctctagcaatagtatgagcgactatattcgcttgtctcctattaaactcaatcttagagttttcaaaccaagaac |
11524165 |
T |
|
| Q |
101 |
aacatcgacgtctacaattatcaatgattgcgccaaattcagatatatcattgcttcctttaatgtaataatctacaacccgtttggcatccatctcaaa |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11524166 |
aacatcgacgtctacaatcatcaatgattgcgccaaattcagatatatcattgcttcctttaatgtaataatctacagcccgtttggcatccatctcaaa |
11524265 |
T |
|
| Q |
201 |
atagacattagtga |
214 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
11524266 |
atcgacattagtga |
11524279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 30197916 - 30197779
Alignment:
| Q |
77 |
tcttagagttttcaaaccaagaacaacatcgacgtctacaattatcaatgattgcgccaaattcagatatatcattgcttcctttaatgtaataatctac |
176 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
30197916 |
tcttagagttttcaaaccaataacaacataaacgtctacaatcatcaatggttgcgctgaattcagatatatcattgcttaccttattgtaataatctac |
30197817 |
T |
|
| Q |
177 |
aacccgtttggcatccatctcaaaatagacattagtga |
214 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
30197816 |
aacccttttggcatccatctcaaagtcgacattagtga |
30197779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 14150303 - 14150391
Alignment:
| Q |
1 |
tggggactagctaggagtatggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttc |
89 |
Q |
| |
|
||||||| |||| || |||||| ||| |||||||||||||||||||| |||||||||||||| | | |||||| |||||||||||| |
|
|
| T |
14150303 |
tggggaccagctgagaatatggcctctttagcaagagtatgagcgacctcattcgcttgtctccgactgaactcatccttagagttttc |
14150391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 32835918 - 32836007
Alignment:
| Q |
3 |
gggactagctaggagtatggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttcaaa |
92 |
Q |
| |
|
|||||||||||||| |||| |||| |||||| ||||||| ||| ||||| |||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
32835918 |
gggactagctaggaaagtggcctctcgtgcaagattatgagctacctcattcgtttgtctccgactaaactcaaccttagagttttcaaa |
32836007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 34673864 - 34673651
Alignment:
| Q |
1 |
tggggactagctaggagtatggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttcaaaccaagaac |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
34673864 |
tggggactagctaggagtatggtctctcttgcaagagtatgaatgaccatattcgcttgtttcctattaaactcaaccttagagttttcaaaccaataac |
34673765 |
T |
|
| Q |
101 |
aacatcgacgtctacaattatcaatgattgcgccaaattcagatatatcattgcttcctttaatgtaataatctacaacccgtttggcatccatctcaaa |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34673764 |
aacatcgacgtctacaatcatcaatgattgcgccaaattcagatatatcattgcttcctttaatgtaataatctacaacccgtttggcatccatctcaaa |
34673665 |
T |
|
| Q |
201 |
atagacattagtga |
214 |
Q |
| |
|
|| ||| ||||||| |
|
|
| T |
34673664 |
atcgacgttagtga |
34673651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 35899169 - 35899306
Alignment:
| Q |
77 |
tcttagagttttcaaaccaagaacaacatcgacgtctacaattatcaatgattgcgccaaattcagatatatcattgcttcctttaatgtaataatctac |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
35899169 |
tcttagagttttcaaaccaataacaacatcgacgtctacaatcatcaatggttgcgctgaattcagatatatcattgcttaccttattgtaataatctac |
35899268 |
T |
|
| Q |
177 |
aacccgtttggcatccatctcaaaatagacattagtga |
214 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
35899269 |
aacccttttggcatccatctcaaagtcgacattagtga |
35899306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 14489305 - 14489393
Alignment:
| Q |
1 |
tggggactagctaggagtatggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttc |
89 |
Q |
| |
|
||||||||||||| || || || |||||||||||||||||||||||| |||||||||||||| | |||||| | |||||||||||| |
|
|
| T |
14489305 |
tggggactagctaagaataaagcctctctagcaagagtatgagcgacctcattcgcttgtctccgactaaacttcaccttagagttttc |
14489393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 27039789 - 27039851
Alignment:
| Q |
25 |
tctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttc |
89 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| |||||||| | |||||||||||| |
|
|
| T |
27039789 |
tctctagcaagagtatgagcgacctcattcgctcgtctcc--ttaaactccaccttagagttttc |
27039851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 20463557 - 20463768
Alignment:
| Q |
1 |
tggggactagctaggagtatggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttcaaaccaagaac |
100 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20463557 |
tggggactagctaggattatggc--ctctaccaagaatatgagcgaccatactcgcttgtctcctattaaactcaaccttagagttttcaaaccaagaac |
20463654 |
T |
|
| Q |
101 |
aacatcgacgtctacaattatcaatgattgcgccaaattcagatatatcattgcttcctttaatgtaataatctacaacccgtttggcatccatctcaaa |
200 |
Q |
| |
|
|||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20463655 |
aacaccgacgtctacaatcctcaatgattgtgccaaattcagatatatcattgcttcctttaatgtaataatctacaacccgtttggcatccatctcaaa |
20463754 |
T |
|
| Q |
201 |
atagacattagtga |
214 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
20463755 |
atcaacattagtga |
20463768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 27804681 - 27804769
Alignment:
| Q |
1 |
tggggactagctaggagtatggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttc |
89 |
Q |
| |
|
||||||| |||| || |||||| |||||||||||||||||||||||| |||||||||| ||| | | ||||| | |||||||||||| |
|
|
| T |
27804681 |
tggggaccagctgagaatatggcctctctagcaagagtatgagcgacctcattcgcttgtttccgactgaactccaccttagagttttc |
27804769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 2274838 - 2274905
Alignment:
| Q |
25 |
tctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttcaaa |
92 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||| | |||||| | |||| |||||||||| |
|
|
| T |
2274838 |
tctcgagcaagaatatgagcgaccacattcgcttgtctccgactaaacttcaccttaaagttttcaaa |
2274905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 463751 - 463614
Alignment:
| Q |
77 |
tcttagagttttcaaaccaagaacaacatcgacgtctacaattatcaatgattgcgccaaattcagatatatcattgcttcctttaatgtaataatctac |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
463751 |
tcttagagttttcaaaccaataacaacatcgacgtctacaatcatcaatggttgcgctgaattcagatatatcattgcttaccttattgtaataatctac |
463652 |
T |
|
| Q |
177 |
aacccgtttggcatccatctcaaaatagacattagtga |
214 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
463651 |
aacccttttggcatccatctcaaagtcgacattagtga |
463614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 52053159 - 52053022
Alignment:
| Q |
77 |
tcttagagttttcaaaccaagaacaacatcgacgtctacaattatcaatgattgcgccaaattcagatatatcattgcttcctttaatgtaataatctac |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
52053159 |
tcttagagttttcaaaccaataacaacatcgacgtctacaatcatcaatggttgcgctgaattcagatatatcattgcttaccttattgtaataatctac |
52053060 |
T |
|
| Q |
177 |
aacccgtttggcatccatctcaaaatagacattagtga |
214 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
52053059 |
aacccttttggcatccatctcaaagtcgacattagtga |
52053022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 53572771 - 53572634
Alignment:
| Q |
77 |
tcttagagttttcaaaccaagaacaacatcgacgtctacaattatcaatgattgcgccaaattcagatatatcattgcttcctttaatgtaataatctac |
176 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
53572771 |
tcttagagttttcaaaccaataacaacataaacgtctacaatcatcaatggttgcgctgaattcagatatatcattgcttaccttattgtaataatctac |
53572672 |
T |
|
| Q |
177 |
aacccgtttggcatccatctcaaaatagacattagtga |
214 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
53572671 |
aacccttttggcatccatctcaaagtcgacattagtga |
53572634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 22522576 - 22522648
Alignment:
| Q |
20 |
tggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttcaaa |
92 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||| | ||||||| | ||||||||||||||| |
|
|
| T |
22522576 |
tggcttctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagagttttcaaa |
22522648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 1538980 - 1539042
Alignment:
| Q |
30 |
agcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttcaaa |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||| | ||||||||||||||| |
|
|
| T |
1538980 |
agcaagagtatgagcgaccatattcgcttgtctccgactaaactccaccttagagttttcaaa |
1539042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 19792353 - 19792281
Alignment:
| Q |
20 |
tggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttcaaa |
92 |
Q |
| |
|
|||| ||||||||||| |||||||| |||| ||| |||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
19792353 |
tggcctctctagcaagtgtatgagcaaccacatttgcttgtctccgattaaactccaccttagagttttcaaa |
19792281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 6032804 - 6032874
Alignment:
| Q |
18 |
tatggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagtttt |
88 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| |||||||||||||| | ||||| | | ||||||||||| |
|
|
| T |
6032804 |
tatggcctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaacaccaccttagagtttt |
6032874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 54332514 - 54332582
Alignment:
| Q |
20 |
tggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagtttt |
88 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||| |||||||| | ||||||| | ||||||||||| |
|
|
| T |
54332514 |
tggcctctcgagcaagagtatgagcgaccacattcgtttgtctccgactaaactccaccttagagtttt |
54332582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 16993998 - 16994135
Alignment:
| Q |
77 |
tcttagagttttcaaaccaagaacaacatcgacgtctacaattatcaatgattgcgccaaattcagatatatcattgcttcctttaatgtaataatctac |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
16993998 |
tcttagagttttcaaaccaataacaacatcgacgtctacaatcatcaatggttgcgctgaattcagatatatcattgcttaccttattgtaataatctac |
16994097 |
T |
|
| Q |
177 |
aacccgtttggcatccatctcaaaatagacattagtga |
214 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
16994098 |
aacccttttggcatccatctcaaagtcgacattagtga |
16994135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 31356709 - 31356846
Alignment:
| Q |
77 |
tcttagagttttcaaaccaagaacaacatcgacgtctacaattatcaatgattgcgccaaattcagatatatcattgcttcctttaatgtaataatctac |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
31356709 |
tcttagagttttcaaaccaataacaacatcgacgtctacaatcatcaatggttgcgctgaattcagatatatcattgcttaccttattgtaataatctac |
31356808 |
T |
|
| Q |
177 |
aacccgtttggcatccatctcaaaatagacattagtga |
214 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
31356809 |
aacccttttggcatccatctcaaagtcgacattagtga |
31356846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 202
Target Start/End: Complemental strand, 15333417 - 15333313
Alignment:
| Q |
100 |
caacatcgacgtctacaattatcaatgattg--cgccaaattcagatatatcattgcttcctttaatgtaataatctacaacccgtttggcatccatctc |
197 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||| |||| ||||| | ||||||||||||| ||| ||||||||||||||| || ||||||||||| ||| |
|
|
| T |
15333417 |
caacatcgtcgtctacaatcatcaacgattgggcgccgaattcgaaaatatcattgcttctcttattgtaataatctacaatccttttggcatccaactc |
15333318 |
T |
|
| Q |
198 |
aaaat |
202 |
Q |
| |
|
||||| |
|
|
| T |
15333317 |
aaaat |
15333313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 3215129 - 3215058
Alignment:
| Q |
18 |
tatggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttc |
89 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| |||||||||||||||| | ||||| | |||||||||||| |
|
|
| T |
3215129 |
tatggcctctgtagcaagagtatgagcgacctcattcgcttgtctcctactgaactccaccttagagttttc |
3215058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 17371707 - 17371671
Alignment:
| Q |
37 |
gtatgagcgaccatattcgcttgtctcctattaaact |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17371707 |
gtatgagcgaccatattcgcttgtctcctaataaact |
17371671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 24427558 - 24427623
Alignment:
| Q |
9 |
agctaggagtatggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactc |
74 |
Q |
| |
|
|||||||| | ||| |||||| |||||||||||||||||| ||| ||||||| |||| ||||||| |
|
|
| T |
24427558 |
agctaggaatgtggtttctcttgcaagagtatgagcgacctcattggcttgtcgcctaataaactc |
24427623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 3158415 - 3158487
Alignment:
| Q |
20 |
tggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttcaaa |
92 |
Q |
| |
|
|||| |||| |||||||||||||| ||| | |||||||||||| | ||||||| | ||||||||||||||| |
|
|
| T |
3158415 |
tggcctctcgagcaagagtatgagtgacttcactcgcttgtctccgactaaactctaccttagagttttcaaa |
3158487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 22719 - 22810
Alignment:
| Q |
1 |
tggggactagctaggagtatggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttcaaa |
92 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||||||||||||||| |||||||||||||| | |||||| | ||||||||||||||| |
|
|
| T |
22719 |
tggggactagctagggaaatggtctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaacttcaccttagagttttcaaa |
22810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 1512376 - 1512285
Alignment:
| Q |
1 |
tggggactagctaggagtatggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttcaaa |
92 |
Q |
| |
|
||||||||||||||| ||| | |||| |||||||||||||||||||| |||||||||||||| | ||||||| | |||||| |||||||| |
|
|
| T |
1512376 |
tggggactagctagggaaatgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaa |
1512285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 12200399 - 12200464
Alignment:
| Q |
25 |
tctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttca |
90 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | ||||||| |||||| |||||||| |
|
|
| T |
12200399 |
tctctagcaagagtatgagcgacctcattcgcttgtctccaactaaactccatcttaaagttttca |
12200464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 5477351 - 5477407
Alignment:
| Q |
36 |
agtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttcaaa |
92 |
Q |
| |
|
|||||||| |||| |||||||||||||| | ||||||| | ||||||||||||||| |
|
|
| T |
5477351 |
agtatgagtgacctcattcgcttgtctccgactaaactccaccttagagttttcaaa |
5477407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 30273660 - 30273747
Alignment:
| Q |
1 |
tggggactagctaggagtatggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagtttt |
88 |
Q |
| |
|
||||||| || || ||||| ||||||||||||||||||||||||||| |||||||||||||| | ||||||| | ||||| ||||| |
|
|
| T |
30273660 |
tggggaccagttaagagtaaggcttctctagcaagagtatgagcgacttcattcgcttgtctccgactaaactccaccttagtgtttt |
30273747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 44587719 - 44587647
Alignment:
| Q |
20 |
tggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttcaaa |
92 |
Q |
| |
|
|||||||| |||||||| |||||| |||| ||||| |||||||| | ||||||| | ||||||||||||||| |
|
|
| T |
44587719 |
tggcttcttgagcaagagcatgagcaaccacattcgattgtctccgactaaactccaccttagagttttcaaa |
44587647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 25939084 - 25939032
Alignment:
| Q |
40 |
tgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttcaaa |
92 |
Q |
| |
|
||||||||| |||||||||||||| | ||||||| | ||||||||||||||| |
|
|
| T |
25939084 |
tgagcgacctcattcgcttgtctccgactaaactctaccttagagttttcaaa |
25939032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 40796614 - 40796542
Alignment:
| Q |
20 |
tggcttctctagcaagagtatgagcgaccatattcgcttgtctcctattaaactcaatcttagagttttcaaa |
92 |
Q |
| |
|
|||| ||||||||||| |||||||| |||| ||| |||||| ||| |||||||| | |||| |||||||||| |
|
|
| T |
40796614 |
tggcatctctagcaagtgtatgagcaaccacatttgcttgtttccgattaaacttcaccttaaagttttcaaa |
40796542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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