View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15315_high_3 (Length: 571)

Name: NF15315_high_3
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15315_high_3
NF15315_high_3
[»] chr5 (5 HSPs)
chr5 (12-552)||(39952422-39952963)
chr5 (296-417)||(23920117-23920238)
chr5 (224-319)||(22917308-22917404)
chr5 (221-319)||(13596832-13596931)
chr5 (248-314)||(1685106-1685172)
[»] chr3 (3 HSPs)
chr3 (48-224)||(50416814-50416993)
chr3 (234-314)||(42614280-42614360)
chr3 (221-282)||(41053754-41053816)
[»] scaffold0001 (1 HSPs)
scaffold0001 (239-417)||(12729-12907)
[»] chr8 (6 HSPs)
chr8 (249-419)||(24847957-24848127)
chr8 (296-417)||(30344377-30344498)
chr8 (221-333)||(28940743-28940856)
chr8 (221-312)||(2680265-2680357)
chr8 (508-552)||(30339758-30339802)
chr8 (221-276)||(30344500-30344557)
[»] chr6 (11 HSPs)
chr6 (296-417)||(18985279-18985400)
chr6 (249-345)||(8746751-8746847)
chr6 (221-314)||(2627674-2627763)
chr6 (221-280)||(11681699-11681760)
chr6 (221-313)||(22978347-22978435)
chr6 (221-313)||(23809968-23810056)
chr6 (234-316)||(34218741-34218820)
chr6 (248-319)||(22721094-22721165)
chr6 (221-300)||(1363155-1363235)
chr6 (234-314)||(11168835-11168915)
chr6 (365-417)||(11682650-11682702)
[»] chr7 (8 HSPs)
chr7 (279-417)||(25350576-25350714)
chr7 (279-417)||(25356270-25356408)
chr7 (234-299)||(33097879-33097944)
chr7 (224-319)||(25731043-25731139)
chr7 (239-299)||(31299417-31299477)
chr7 (221-282)||(33105296-33105358)
chr7 (248-300)||(4478967-4479019)
chr7 (223-300)||(21895080-21895159)
[»] chr2 (5 HSPs)
chr2 (492-552)||(37222063-37222123)
chr2 (222-331)||(25123459-25123571)
chr2 (221-312)||(45003691-45003783)
chr2 (234-300)||(15084343-15084409)
chr2 (259-311)||(44800576-44800628)
[»] chr4 (5 HSPs)
chr4 (221-312)||(5482954-5483046)
chr4 (504-552)||(34230119-34230167)
chr4 (221-312)||(1694811-1694903)
chr4 (234-313)||(36678774-36678851)
chr4 (234-298)||(1967467-1967531)
[»] chr1 (3 HSPs)
chr1 (221-319)||(29693301-29693400)
chr1 (221-314)||(52037420-52037514)
chr1 (234-314)||(13624230-13624309)


Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 12 - 552
Target Start/End: Complemental strand, 39952963 - 39952422
Alignment:
Q  12 atgaaaaagaataactctgcgaatgnnnnnnnnnnntagttaagttagatgctagctttctcatcaatatatcactaaaataatagacacatccatgtca 111  Q
    |||||||||||||||||||||||||           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39952963 atgaaaaagaataactctgcgaatgaaaaaaaaaaatagttaagttagatgctagctttcacatcaatatatcactaaaataatagacacatccatgtca 39952864  T
Q  112 cattatcagatatatccaaacttttagtctttcccaaatatgttgcaagctatggtttctgatgttaaccatcaaaacaaagtttatacaatcgatgatt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39952863 cattatcagatatatccaaacttttagtctttcccaaatatgttgcaagctatggtttctgatgttaaccatcacaacaaagtttatacaatcgatgatt 39952764  T
Q  212 tattctcatttgaattacgtactttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggt 311  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39952763 tattctcatttgaattacgtactttttaaaaatttgctctaacggagagatgttcaaattacagaacattgccatttttcataaatttgagaacgaaggt 39952664  T
Q  312 cgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattgtcattacatacataatgtactgcagcataaata 411  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952663 cgcataatccgaatatttgtgatgcatggtctaaagcatggcataaaagatagcataacaattattgtcattacatacataatgtactgcagcataaata 39952564  T
Q  412 tagatgct-ccaaaaatgaagtgattagcgaaattagagcaccaacaaaaccagagttcaatctactcacaccatatccattgacatctgcggaaaggat 510  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952563 tagatgctgccaaaaatgaagtgattagcgaaattaaagcaccaacaaaaccagagttcaatctactcacaccatatccattgacatctgcggaaaggat 39952464  T
Q  511 atacaaaaacaataatcagcaagagttcgagatactactgac 552  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  39952463 atacaaaaacaataatcagcaagagttcgagatactactgac 39952422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 23920238 - 23920117
Alignment:
Q  296 atttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattgtcattacatacataatg 395  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  23920238 atttgtgaacgaaggtcacataatccgaatatttgtgatgcatggtctaagacatggcattaaagatagcataacaattattgtcattgcgtacataatg 23920139  T
Q  396 tactgcagcataaatatagatg 417  Q
    |||| ||||| |||||||||||    
T  23920138 tactccagcagaaatatagatg 23920117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 224 - 319
Target Start/End: Complemental strand, 22917404 - 22917308
Alignment:
Q  224 aattacgtactttttaaaaa-tttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 319  Q
    ||||||||| |||||||||| |||||||||| ||| |||||||||||||||   ||||||||||| ||| |||||||| |||||||||| |||||||    
T  22917404 aattacgtaatttttaaaaaatttgctctaaaggatagatgttcaaattacgcgacattgccattcttcgtaaatttgagaacgaaggttgcataat 22917308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 221 - 319
Target Start/End: Complemental strand, 13596931 - 13596832
Alignment:
Q  221 ttgaattacgtactttttaaaaat-ttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 319  Q
    |||||||||||| ||||||||||  ||||||||| ||||||||||||||||||    ||||||||||  ||| |||||||| |||||||||| |||||||    
T  13596931 ttgaattacgtattttttaaaaaaattgctctaaaggagagatgttcaaattatgcgacattgccatgcttcgtaaatttgagaacgaaggttgcataat 13596832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 1685106 - 1685172
Alignment:
Q  248 ctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 314  Q
    |||||| ||||||||||||||||||| ||||||||| ||| ||| ||| |||| |||||||||||||    
T  1685106 ctctaaaggagagatgttcaaattacggaacattgctattcttcgtaattttgagaacgaaggtcgc 1685172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 3e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 50416814 - 50416993
Alignment:
Q  48 tagttaagttagatgctagctttctcatcaatatatcactaaaataata---gacacatccatgtcacattatcagatatatccaaacttttagtctttc 144  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||   |||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  50416814 tagttaagttagatgctagctttcacatcaatataacactaaaataataaatgacacagccatgtcacgttatcagatatatgcaaacttttagtctttc 50416913  T
Q  145 ccaaatatgttgcaagctatggtttctgatgttaaccatcaaaacaaagtttatacaatcgatgatttattctcatttga 224  Q
    ||| |||||||| |||| ||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||    
T  50416914 ccagatatgttgaaagcaatggtttctgatgttaaccatcacaacaaagtttatacaatctataatttattctcatttga 50416993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 42614280 - 42614360
Alignment:
Q  234 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 314  Q
    ||||||||||||| || ||| | |||||||||||||||||  |||||||  ||| |||  ||||||| |||||||||||||    
T  42614280 tttttaaaaatttactttaaagaagagatgttcaaattacgaaacattgttattcttcgaaaatttgagaacgaaggtcgc 42614360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 41053816 - 41053754
Alignment:
Q  221 ttgaattacgtactttttaaaaa-tttgctctaatggagagatgttcaaattacagaacattg 282  Q
    ||||||||| || |||||||||| ||||||||||  | |||||||||||||||| ||||||||    
T  41053816 ttgaattacatattttttaaaaaatttgctctaaatgtgagatgttcaaattacggaacattg 41053754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 239 - 417
Target Start/End: Complemental strand, 12907 - 12729
Alignment:
Q  239 aaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcat 338  Q
    ||||| || |||||| |||||||||||||||| |   || ||||||||| ||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  12907 aaaaaattactctaaaggagagatgttcaaatgaggaaatattgccattcttcgtaaatttaagaacgaaggtcgcataatccgaatatttgtgatgcat 12808  T
Q  339 ggtctaaaacatggcataaaagatagcataacaattattgtcattacatacataatgtactgcagcataaatatagatg 417  Q
    | |||||  |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| ||||||    
T  12807 gatctaaggcatggcataaaagataacataacaatcattgtcattacatacataatgtactgcagcagaaatgtagatg 12729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 249 - 419
Target Start/End: Original strand, 24847957 - 24848127
Alignment:
Q  249 tctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaac 348  Q
    ||||| |||||||||||||||||| | ||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||  ||||||||||||||  |    
T  24847957 tctaaaggagagatgttcaaattataaaacattgtcattcttcgtaaatttgagaacgaaggtcgcataatccgaatatttacgatgcatggtctaaggc 24848056  T
Q  349 atggcataaaagatagcataacaattattgtcattacatacataatgtactgcagcataaatatagatgct 419  Q
    ||  ||| ||||||| ||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||    
T  24848057 ataacatcaaagataacataacaaccattgtcattacatacataacgtactgcagcacaaatatagatgct 24848127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 30344498 - 30344377
Alignment:
Q  296 atttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattgtcattacatacataatg 395  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  30344498 atttgtgaatgaaggtcacataatccgaatatttgtgatgcatggtctaagacatggcataaaagatagcataacaattattgtcattgcgtacataatg 30344399  T
Q  396 tactgcagcataaatatagatg 417  Q
    |||| || || |||||||||||    
T  30344398 tactacaacagaaatatagatg 30344377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 221 - 333
Target Start/End: Original strand, 28940743 - 28940856
Alignment:
Q  221 ttgaattacgtactttttaaaaa-tttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 319  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| |||| ||| |||| ||| |||| |||||| ||||||    
T  28940743 ttgaattacgtactttttaaaaaatttgttctaaaggagagatgttcaaattacagaacattgtcattcttcgtaaacttgagaacaaaggtcccataat 28940842  T
Q  320 ccgaatatttgtga 333  Q
    | ||||||||||||    
T  28940843 ctgaatatttgtga 28940856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 2680265 - 2680357
Alignment:
Q  221 ttgaattacgtactttt-taaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtc 312  Q
    |||||||||||| |||| |||||||||||||||| ||| ||||||||||||||| ||| |||| | || |||||||||||| |||||||||||    
T  2680265 ttgaattacgtatttttttaaaaatttgctctaaaggaaagatgttcaaattacggaatattgtcgttcttcataaatttgagaacgaaggtc 2680357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 508 - 552
Target Start/End: Complemental strand, 30339802 - 30339758
Alignment:
Q  508 gatatacaaaaacaataatcagcaagagttcgagatactactgac 552  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  30339802 gatatacaaaaacaataatcagcaagagtttgagatactactgac 30339758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 30344557 - 30344500
Alignment:
Q  221 ttgaattacgtactttttaaaaa--tttgctctaatggagagatgttcaaattacaga 276  Q
    |||||||||||| |||| |||||  || ||||||| ||||||||||||||||||||||    
T  30344557 ttgaattacgtatttttcaaaaaaattagctctaaaggagagatgttcaaattacaga 30344500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 18985279 - 18985400
Alignment:
Q  296 atttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattgtcattacatacataatg 395  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  18985279 atttgtgaacgaaggtcacataatccgaatatttgtgatgcatggtctaagacatggcattaaagatagcataacaattattgtcattgcgtacataatg 18985378  T
Q  396 tactgcagcataaatatagatg 417  Q
    |||| ||||| |||||||||||    
T  18985379 tactccagcagaaatatagatg 18985400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 345
Target Start/End: Original strand, 8746751 - 8746847
Alignment:
Q  249 tctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaa 345  Q
    ||||| |||| |||||||||||||  |||||||| |||| ||| |||||||| |||| |||||||||||||| ||||||||  |||| |||||||||    
T  8746751 tctaaaggagggatgttcaaattatggaacattgtcattcttcgtaaatttgagaacaaaggtcgcataatctgaatatttacgatgtatggtctaa 8746847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 221 - 314
Target Start/End: Original strand, 2627674 - 2627763
Alignment:
Q  221 ttgaattacgtactttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 314  Q
    |||||||||||| |||| ||||| ||||||||   ||||||||||||||||||| |||||||| ||| ||| |||||||| |||||||||||||    
T  2627674 ttgaattacgta-ttttaaaaaaattgctcta---gagagatgttcaaattacataacattgctattcttcgtaaatttgagaacgaaggtcgc 2627763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 11681699 - 11681760
Alignment:
Q  221 ttgaattacgtacttttt--aaaaatttgctctaatggagagatgttcaaattacagaacat 280  Q
    ||||||||||||||||||  ||||| || |||||| ||||||||||||||||||||||||||    
T  11681699 ttgaattacgtacttttttaaaaaaattactctaaaggagagatgttcaaattacagaacat 11681760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 22978347 - 22978435
Alignment:
Q  221 ttgaattacgtactttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcg 313  Q
    |||||||||||| |||| ||||| ||||||||   ||||||||||||||||||| |||||||   || ||| |||||||| ||||||||||||    
T  22978347 ttgaattacgta-ttttaaaaaaattgctcta---gagagatgttcaaattacataacattgttgttcttcgtaaatttgagaacgaaggtcg 22978435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 23810056 - 23809968
Alignment:
Q  221 ttgaattacgtactttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcg 313  Q
    |||||||||||| |||| ||||| ||||||||   ||||||||||||||||||| |||||||   || ||| |||||||| ||||||||||||    
T  23810056 ttgaattacgta-ttttaaaaaaattgctcta---gagagatgttcaaattacataacattgttgttcttcgtaaatttgagaacgaaggtcg 23809968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 34218820 - 34218741
Alignment:
Q  234 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcat 316  Q
    ||||||||||||||||   | ||||||||||||||||||| ||| ||||  ||| |||||||||| |  ||||||||||||||    
T  34218820 tttttaaaaatttgct---aaggagagatgttcaaattacggaatattgtaattcttcataaattcgaaaacgaaggtcgcat 34218741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 22721165 - 22721094
Alignment:
Q  248 ctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 319  Q
    |||||| |||||||||||||||||||   ||||||||||| ||| | |||||| ||||| |||| |||||||    
T  22721165 ctctaaaggagagatgttcaaattacgcgacattgccattcttcgttaatttgagaacgtaggttgcataat 22721094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 1363235 - 1363155
Alignment:
Q  221 ttgaattacgtactttttaaaaatttg-ctctaatggagagatgttcaaattacagaacattgccatttttcataaatttg 300  Q
    ||||||||| || ||||||||| |||  |||||| ||||| ||||||||||||| ||||||||  ||| ||| ||||||||    
T  1363235 ttgaattacatattttttaaaatttttactctaaaggagatatgttcaaattacggaacattgttattcttcgtaaatttg 1363155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 11168915 - 11168835
Alignment:
Q  234 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 314  Q
    |||||||||| || ||||||  ||| |||||||||||||| |||||||   ||| ||| ||| |||| |||||||||||||    
T  11168915 tttttaaaaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgc 11168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 417
Target Start/End: Original strand, 11682650 - 11682702
Alignment:
Q  365 cataacaattattgtcattacatacataatgtactgcagcataaatatagatg 417  Q
    ||||| || |||||||||| |||||||||||||||||| || | |||||||||    
T  11682650 cataataactattgtcatttcatacataatgtactgcaacacacatatagatg 11682702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 279 - 417
Target Start/End: Original strand, 25350576 - 25350714
Alignment:
Q  279 attgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattg 378  Q
    |||| |||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||  |||| ||||||| ||| ||||||||| ||||    
T  25350576 attgtcattcttcgtaaatttgagaacgaaggacgcataatccgaatatttgtgatgcatggtctaaggcatgacataaaaaataacataacaatcattg 25350675  T
Q  379 tcattacatacataatgtactgcagcataaatatagatg 417  Q
    | |||||||| |||||||||| |||||||||||||||||    
T  25350676 ttattacatagataatgtactacagcataaatatagatg 25350714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 279 - 417
Target Start/End: Original strand, 25356270 - 25356408
Alignment:
Q  279 attgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattg 378  Q
    |||| |||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||  |||| ||||||| ||| ||||||||| ||||    
T  25356270 attgtcattcttcgtaaatttgagaacgaaggacgcataatccgaatatttgtgatgcatggtctaaggcatgacataaaaaataacataacaatcattg 25356369  T
Q  379 tcattacatacataatgtactgcagcataaatatagatg 417  Q
    | |||||||| |||||||||| |||||||||||||||||    
T  25356370 ttattacatagataatgtactacagcataaatatagatg 25356408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 33097879 - 33097944
Alignment:
Q  234 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaattt 299  Q
    |||| ||||||||||||||| ||||||||||||||||||| |||||||| |||| ||| |||||||    
T  33097879 ttttaaaaaatttgctctaaaggagagatgttcaaattacggaacattgtcattcttcgtaaattt 33097944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 224 - 319
Target Start/End: Complemental strand, 25731139 - 25731043
Alignment:
Q  224 aattacgtactttttaaaaat-ttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 319  Q
    ||||||||| ||||||||||  ||||||||| |||||||||||||||||||   |||||| || | ||| |||||||| |||||||||| |||||||    
T  25731139 aattacgtattttttaaaaaaattgctctaaaggagagatgttcaaattacgcgacattgtcagtcttcgtaaatttgagaacgaaggttgcataat 25731043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 31299477 - 31299417
Alignment:
Q  239 aaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaattt 299  Q
    ||||||||| ||||| ||||||||||| ||||||| |||||||| |||| |||||||||||    
T  31299477 aaaaatttgttctaaaggagagatgttaaaattacggaacattgtcattcttcataaattt 31299417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 33105358 - 33105296
Alignment:
Q  221 ttgaattacgtacttttt-aaaaatttgctctaatggagagatgttcaaattacagaacattg 282  Q
    |||||||||||| ||||| |||||||||||| ||  |||||||||||||||||| ||||||||    
T  33105358 ttgaattacgtatttttttaaaaatttgctccaaaagagagatgttcaaattacggaacattg 33105296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 4478967 - 4479019
Alignment:
Q  248 ctctaatggagagatgttcaaattacagaacattgccatttttcataaatttg 300  Q
    |||||| |||||||| |||||||||||||||||||| | | ||| ||||||||    
T  4478967 ctctaaaggagagatattcaaattacagaacattgctaatcttcgtaaatttg 4479019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 21895159 - 21895080
Alignment:
Q  223 gaattacgtactttttaaaaa--tttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttg 300  Q
    ||||||| || ||||||||||  ||| |||||| ||||| ||||||||||||| ||||||| | ||| ||| ||||||||    
T  21895159 gaattacatattttttaaaaaattttactctaaaggagatatgttcaaattacggaacattactattcttcgtaaatttg 21895080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 492 - 552
Target Start/End: Complemental strand, 37222123 - 37222063
Alignment:
Q  492 tgacatctgcggaaaggatatacaaaaacaataatcagcaagagttcgagatactactgac 552  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37222123 tgacatctgcgaaaaggatatacaaaaacaattatcagcaagagttcgagatactactgac 37222063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 222 - 331
Target Start/End: Original strand, 25123459 - 25123571
Alignment:
Q  222 tgaattacgtacttttt---aaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataa 318  Q
    ||||||||||| |||||   |||||||||||| ||  |||||||||||||||||| |||||||| |||| ||| |||| ||| |||||||||| ||||||    
T  25123459 tgaattacgtatttttttaaaaaaatttgctccaaatgagagatgttcaaattacggaacattgtcattcttcgtaaacttgagaacgaaggttgcataa 25123558  T
Q  319 tccgaatatttgt 331  Q
    |||||| ||||||    
T  25123559 tccgaacatttgt 25123571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 45003691 - 45003783
Alignment:
Q  221 ttgaattacgtacttttta-aaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtc 312  Q
    |||||||||||| |||||  |||||||||||||| ||| ||||||||||||||| ||| |||| | || |||||||||||| |||||||||||    
T  45003691 ttgaattacgtattttttttaaaatttgctctaaaggaaagatgttcaaattacggaatattgtcgttcttcataaatttgagaacgaaggtc 45003783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 300
Target Start/End: Original strand, 15084343 - 15084409
Alignment:
Q  234 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttg 300  Q
    ||||||||| ||| |||||| ||||| ||||||||||||| ||||||||| ||| ||| ||||||||    
T  15084343 tttttaaaattttactctaaaggagatatgttcaaattacggaacattgctattcttcgtaaatttg 15084409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 44800628 - 44800576
Alignment:
Q  259 agatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggt 311  Q
    |||||||||||||||  |||||||| ||| ||| |||||||| ||||||||||    
T  44800628 agatgttcaaattacgaaacattgctattcttcgtaaatttgagaacgaaggt 44800576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 5483046 - 5482954
Alignment:
Q  221 ttgaattacgtacttttt-aaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtc 312  Q
    |||||||||||| ||||| ||||||||||||||| ||| ||||||||||||||| ||| |||| | || |||||||||||| |||||||||||    
T  5483046 ttgaattacgtatttttttaaaaatttgctctaaaggaaagatgttcaaattacggaatattgtcgttcttcataaatttgagaacgaaggtc 5482954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 504 - 552
Target Start/End: Original strand, 34230119 - 34230167
Alignment:
Q  504 aaaggatatacaaaaacaataatcagcaagagttcgagatactactgac 552  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34230119 aaaggatgtacaaaaacaataatcagcaagagttcgagatactactgac 34230167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 1694903 - 1694811
Alignment:
Q  221 ttgaattacgta-ctttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtc 312  Q
    |||||||||| | ||||| ||||| ||||||||| ||||| |||||||||| || ||||||||| ||| ||| |||||||| |||||||||||    
T  1694903 ttgaattacgcatcttttaaaaaaattgctctaaaggagatatgttcaaatcacggaacattgctattcttcgtaaatttgagaacgaaggtc 1694811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 36678774 - 36678851
Alignment:
Q  234 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcg 313  Q
    ||||||||||||| ||||||   ||||||||| |||||||| |||||||| ||||||| |||||||| ||||||||||||    
T  36678774 tttttaaaaatttactctaaa--agagatgtttaaattacaaaacattgctatttttcgtaaatttgagaacgaaggtcg 36678851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 1967467 - 1967531
Alignment:
Q  234 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatt 298  Q
    |||||||||||||||| |||  |||| ||||||||||||| |||||||| |||| ||| ||||||    
T  1967467 tttttaaaaatttgctttaaaagagaaatgttcaaattacggaacattgtcattcttcgtaaatt 1967531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 221 - 319
Target Start/End: Complemental strand, 29693400 - 29693301
Alignment:
Q  221 ttgaattacgtactttttaaaaa-tttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 319  Q
    |||||||||||| |||||||||| |||| ||||| | |||||||||||||||||   ||||||||||| ||| |||||||| |||||||||| |||||||    
T  29693400 ttgaattacgtattttttaaaaaatttgttctaaagaagagatgttcaaattacgcgacattgccattcttcgtaaatttgagaacgaaggttgcataat 29693301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 221 - 314
Target Start/End: Original strand, 52037420 - 52037514
Alignment:
Q  221 ttgaattacgtactttttaaaaat-ttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 314  Q
    |||||||| ||| ||||||||||  || |||||| ||||||||||||||||||| ||||||||| ||| ||| ||| |||| |||||||||||||    
T  52037420 ttgaattatgtattttttaaaaaaattcctctaaaggagagatgttcaaattacggaacattgctattcttcgtaattttgagaacgaaggtcgc 52037514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 13624309 - 13624230
Alignment:
Q  234 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 314  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||||||| | ||| ||| ||| |||| |||||||||||||    
T  13624309 tttttaaaaattt-ctctaaaggagagatgttcaaattacggaacattcctattcttcgtaattttgagaacgaaggtcgc 13624230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University