View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15315_low_10 (Length: 464)

Name: NF15315_low_10
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15315_low_10
NF15315_low_10
[»] chr4 (2 HSPs)
chr4 (140-450)||(5890469-5890781)
chr4 (140-175)||(5882275-5882310)
[»] chr8 (12 HSPs)
chr8 (140-296)||(23268989-23269145)
chr8 (8-141)||(23268744-23268878)
chr8 (247-318)||(2004163-2004234)
chr8 (247-318)||(2011158-2011229)
chr8 (247-316)||(2437201-2437270)
chr8 (247-318)||(1969407-1969478)
chr8 (247-318)||(1965465-1965536)
chr8 (247-318)||(2007543-2007614)
chr8 (324-426)||(14293343-14293439)
chr8 (262-314)||(1963810-1963862)
chr8 (377-450)||(1969640-1969712)
chr8 (290-318)||(2017946-2017974)
[»] chr1 (2 HSPs)
chr1 (251-318)||(5902975-5903042)
chr1 (251-318)||(5906459-5906526)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 140 - 450
Target Start/End: Complemental strand, 5890781 - 5890469
Alignment:
Q  140 atgataggaaagttcattgtatctgtatcaaagaatttaagcattgtaggagattggaatcaagaaagttaattaggcaagtcaatgtagggtcacttgt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5890781 atgataggaaagttcattgtatctgtatcaaagaatttaagcattgtaggagattggaatcaagaaagttaatcaggcaagtcaatgtagggtcacttgt 5890682  T
Q  240 aggagccgcttctaatgcactcaaagaagatggttcttctacaaacattttttctcaattagcactcaagtggagaaatc--agtcattttaaagcagat 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  5890681 aggagccgcttctaatgcactcaaagaagatggttcttctacaaacattttttctcaattagcactcaagtggagaaatcatagtcattttaaagcagat 5890582  T
Q  338 gataatcattttctatagattttgatttttgttgttgaattgaattgtgtaatcatttttgtcataaataatagaattaatatatggtgacactgtactc 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5890581 gataatcattttctatagattttgatttttgttgttgaattgaattgtataatcatttttgtcataaataatagaattaatatatggtgacactgtactc 5890482  T
Q  438 acttcttgtaatt 450  Q
    |||||||||||||    
T  5890481 acttcttgtaatt 5890469  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 175
Target Start/End: Complemental strand, 5882310 - 5882275
Alignment:
Q  140 atgataggaaagttcattgtatctgtatcaaagaat 175  Q
    |||||||||||||||||||||| |||||||||||||    
T  5882310 atgataggaaagttcattgtatttgtatcaaagaat 5882275  T

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Target: chr8 (Bit Score: 153; Significance: 6e-81; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 140 - 296
Target Start/End: Original strand, 23268989 - 23269145
Alignment:
Q  140 atgataggaaagttcattgtatctgtatcaaagaatttaagcattgtaggagattggaatcaagaaagttaattaggcaagtcaatgtagggtcacttgt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23268989 atgataggaaagttcattgtatctgtatcaaagaatttaagcattgtaggaaattggaatcaagaaagttaattaggcaagtcaatgtagggtcacttgt 23269088  T
Q  240 aggagccgcttctaatgcactcaaagaagatggttcttctacaaacattttttctca 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23269089 aggagccgcttctaatgcactcaaagaagatggttcttctacaaacattttttctca 23269145  T

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Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 23268744 - 23268878
Alignment:
Q  8 tggaacaagctaaaagtcttgagagaaatttcgtggaacatgagcatattttt-ctatcaggtgatattaatgatgacttccaagtcttccattatgatg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23268744 tggaacaagctaaaagtcttgagagaaatttcgtggaacatgagcatatttttgctatcaggtgatattaatgatgacttccaagtcttccattatgatg 23268843  T
Q  107 cattgaagttgtccactttccatattaaaaattat 141  Q
    |||| |||||||||||||||||||||||| |||||    
T  23268844 cattaaagttgtccactttccatattaaacattat 23268878  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 2004234 - 2004163
Alignment:
Q  247 gcttctaatgcactcaaagaagatggttcttctacaaacattttttctcaattagcactcaagtggagaaat 318  Q
    ||||| |||||  ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  2004234 gcttcgaatgctgtcaaagaagatggttcttctacaaacactatttctcaattagcactcaagtggagaaat 2004163  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 2011229 - 2011158
Alignment:
Q  247 gcttctaatgcactcaaagaagatggttcttctacaaacattttttctcaattagcactcaagtggagaaat 318  Q
    |||||||||||||||||||||||||| ||||||||||| | | ||||||||||| |||||||||||||||||    
T  2011229 gcttctaatgcactcaaagaagatggatcttctacaaagactatttctcaattaacactcaagtggagaaat 2011158  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 2437201 - 2437270
Alignment:
Q  247 gcttctaatgcactcaaagaagatggttcttctacaaacattttttctcaattagcactcaagtggagaa 316  Q
    |||||||||||||||||||||||||||||||| ||||| | | ||||||||||| |||||||||||||||    
T  2437201 gcttctaatgcactcaaagaagatggttcttcgacaaagactatttctcaattaacactcaagtggagaa 2437270  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 1969407 - 1969478
Alignment:
Q  247 gcttctaatgcactcaaagaagatggttcttctacaaacattttttctcaattagcactcaagtggagaaat 318  Q
    ||||| |||||| ||||||||||||||||||||||||| | | |||||||| ||||||||||||||||||||    
T  1969407 gcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggagaaat 1969478  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 1965465 - 1965536
Alignment:
Q  247 gcttctaatgcactcaaagaagatggttcttctacaaacattttttctcaattagcactcaagtggagaaat 318  Q
    ||||| |||||||||||||||||||| ||||||||||| | | | ||||||||| |||||||||||||||||    
T  1965465 gcttccaatgcactcaaagaagatggatcttctacaaagactatatctcaattaacactcaagtggagaaat 1965536  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 2007614 - 2007543
Alignment:
Q  247 gcttctaatgcactcaaagaagatggttcttctacaaacattttttctcaattagcactcaagtggagaaat 318  Q
    ||||| |||||| ||||||||||||||||||||||||| | | |||||||| ||||||| ||||||||||||    
T  2007614 gcttcaaatgcagtcaaagaagatggttcttctacaaaaactatttctcaaatagcacttaagtggagaaat 2007543  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 426
Target Start/End: Original strand, 14293343 - 14293439
Alignment:
Q  324 attttaaagcagatgataatcattttctatagattttgatttttgttgttgaattgaattgtgtaatcatttttgtcataaataatagaattaatatatg 423  Q
    |||||| ||||||||||||||| |||||||||||||||||| ||| || ||||||| |||     ||||||  ||| ||||||||| |||||||||||||    
T  14293343 attttatagcagatgataatcaatttctatagattttgattgttggtggtgaattgtatt-----atcattcgtgttataaataat-gaattaatatatg 14293436  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 1963810 - 1963862
Alignment:
Q  262 aaagaagatggttcttctacaaacattttttctcaattagcactcaagtggag 314  Q
    ||||||||||||||| ||||||| | | |||||||||||||||||||||||||    
T  1963810 aaagaagatggttctactacaaagactctttctcaattagcactcaagtggag 1963862  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 1969640 - 1969712
Alignment:
Q  377 ttgaattgtgtaatcatttttgtcataaataa-tagaattaatatatggtgacactgtactcacttcttgtaatt 450  Q
    ||||||||| |||||||||||  ||| ||||| |||||| ||||||||||||||  |||||||||||||||||||    
T  1969640 ttgaattgtataatcattttt--cattaataactagaatgaatatatggtgacatggtactcacttcttgtaatt 1969712  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 2017974 - 2017946
Alignment:
Q  290 tttctcaattagcactcaagtggagaaat 318  Q
    |||||||||||||||||||||||||||||    
T  2017974 tttctcaattagcactcaagtggagaaat 2017946  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 5902975 - 5903042
Alignment:
Q  251 ctaatgcactcaaagaagatggttcttctacaaacattttttctcaattagcactcaagtggagaaat 318  Q
    ||||||| ||||||||||| || ||||||| ||| |   |||||||||||||||||||||||||||||    
T  5902975 ctaatgcgctcaaagaagacgggtcttctagaaagaccatttctcaattagcactcaagtggagaaat 5903042  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 5906459 - 5906526
Alignment:
Q  251 ctaatgcactcaaagaagatggttcttctacaaacattttttctcaattagcactcaagtggagaaat 318  Q
    ||||||||||  |||||||||| ||||||| ||| | | ||||||||||||||| |||||||| ||||    
T  5906459 ctaatgcacttcaagaagatgggtcttctagaaagactgtttctcaattagcacacaagtggaaaaat 5906526  T

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