View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_low_13 (Length: 404)
Name: NF15315_low_13
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 41573906 - 41573520
Alignment:
| Q |
1 |
aaatacgtgtcaagaaatttaacggtgttgcatttctatgattagtttcgaacttatgatattatcctgaaaaagattcttatcaattcatttaagtgct |
100 |
Q |
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| T |
41573906 |
aaatacgtgtcaagaaatttaacggtgttgcatttccatgactagtttcgaacttatgatattatcctgaaaaagatttttatcaattcatttaagtgct |
41573807 |
T |
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| Q |
101 |
cttgagtcaccattctattatttgagagatctttgaagaaggactaatttaaaaggnnnnnnnnnncataatattcaaattagttattaaattatttgca |
200 |
Q |
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| T |
41573806 |
cttgagtcaccattctattatttgagagatctttgaagaaagactaatttaaaaggaaaaaaaaag-ataatattcaaattagttattaaaatatttgca |
41573708 |
T |
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| Q |
201 |
aataaatcacttgttaagttgtgaaacaggattgtaccataaactgtatagcaaaacaagatttggatgggattgatggatctatcacagctcatggacg |
300 |
Q |
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| T |
41573707 |
aataaatcacttgttaagctgtgaaacaggattgtaccataaactgtatagcaaaacaagatttggatgggattggtggatctatcacagctcatggacg |
41573608 |
T |
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| Q |
301 |
acaatcattgaaggaagaaacaggattttcctttgtgaattgcaacatcgttggaagtggaaaagtgtggcttggaagagcttgggga |
388 |
Q |
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| T |
41573607 |
acaatcattgaaggaagaaacaggattttcctttgtgaattgcaacatcgttggaagtggaaaagtgtggcttggaagagcttgggga |
41573520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 385
Target Start/End: Complemental strand, 41565711 - 41565603
Alignment:
| Q |
277 |
tggatctatcacagctcatggacgacaatcattgaaggaagaaacaggattttcctttgtgaattgcaacatcgttggaagtggaaaagtgtggcttgga |
376 |
Q |
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| T |
41565711 |
tggatatatcacagctcaacaacgtgaatcgttgaagaatgaaacagggctttcctttgtgaattgtcgcattgatggtactggaaaagtgttgcttgga |
41565612 |
T |
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| Q |
377 |
agagcttgg |
385 |
Q |
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| T |
41565611 |
agaccttgg |
41565603 |
T |
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