View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_low_17 (Length: 378)
Name: NF15315_low_17
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 364
Target Start/End: Complemental strand, 24729276 - 24728921
Alignment:
| Q |
2 |
aggtagtttaatacgacttgtagttaaagaatctgataaagaaaaagtgattaaacatgaaagtacaggttatactattgctataagtatcaatatcata |
101 |
Q |
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| T |
24729276 |
aggtagtttaatgcgaccggtagttaaagaatctgataaagaaaaaatgattaaaaatgaaagaacatgttatattatagcta--agtatcaatatcata |
24729179 |
T |
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| Q |
102 |
caaactgagatcgagtgtgggaagccttattttatgcaaccaagattgttccacaagcatatcatgttaaaataaggttttaattttatgcnnnnnnngt |
201 |
Q |
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| T |
24729178 |
catac----attgagtttgggaagccttattttatgcaaccaagattgttccacaagcatatcatgttaaaataaggttttt-ttttatgcaaaaagagt |
24729084 |
T |
|
| Q |
202 |
gatttctttgaatggcctttcaattctagtaagaactatgatgcattcaaagaaacacaaaaaggaaaacagagtgataaacctcttatttactttcagc |
301 |
Q |
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| T |
24729083 |
gatttctttgaatggcctttcaattctagtaagaactatgatgcattcaaagaaacacaaaaaggaaaacagagtgataaacctcttatttactttcagc |
24728984 |
T |
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| Q |
302 |
atttggaccaataacgaccatcctaattcctaagtgctttctccaagttactgacataaattc |
364 |
Q |
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| T |
24728983 |
atttggaccaataacaaccatcctaattcctaactgctttctccaagttactgacataaattc |
24728921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 9636931 - 9636980
Alignment:
| Q |
230 |
gtaagaactatgatgcattcaaagaaacacaaaaaggaaaacagagtgat |
279 |
Q |
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| T |
9636931 |
gtaaggactacgatgcattcaaagaaacacaaaaaggaaaacagagtgat |
9636980 |
T |
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