View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15315_low_19 (Length: 355)
Name: NF15315_low_19
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 92 - 345
Target Start/End: Original strand, 9796653 - 9796906
Alignment:
| Q |
92 |
gttcaaataagtatttcaacaaccacaggagacaaagaagccattttcaaagaaatcccactagaagaccctacagcaagaaacagctatgcaaaacatg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9796653 |
gttcaaataagtatttcaacaaccacaggagacaaagaagccattttcaaagaaatcccactagaagaccctacagcaagaaacagctatgcaaaacatg |
9796752 |
T |
|
| Q |
192 |
gtttgcacgtgatccaagaacgtgagtgacatcatgtcatatatttatttaatgtagttatatatcagaagatgttttttgcatgtgacaaatattgaaa |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9796753 |
gtttgcacgtgatccaagaacgtgagtgacatcatgtcatatatttatttaatgtagttatatatcagaagatgttttttgcatgtgacaaatattgaaa |
9796852 |
T |
|
| Q |
292 |
aatgtgtaggtagttgtttgggttaggagatattgatgaaaacacatgatgatg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9796853 |
aatgtgtaggtagttgtttgggttaggagatattgatgaaaacacatgatgatg |
9796906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University