View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_low_20 (Length: 354)
Name: NF15315_low_20
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 341
Target Start/End: Complemental strand, 49073549 - 49073221
Alignment:
| Q |
15 |
atgaaatgatataaaaggatgaaatctgcaattgcaattactaagatccacaattacaggagaataacaaagtatgaaaaactgagtaacaaactggtag |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49073549 |
atgaaatgatataaaaggatgaaatctgcaattgcaattactaagatccacaattacaggagaatgacaaagtatgaaaaactgagtaacaaactggtag |
49073450 |
T |
|
| Q |
115 |
taaactaccagccccaaaagcacgcaggctttccccaaatcacctaatgtgaccccacaagatcttaacaga--aaaatagtgaatgaatccttcattcc |
212 |
Q |
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| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49073449 |
tgaactaccagccccaaaagcacgcaggcttttcccaaatcacctaatgtgaccccacaagatcttaacagaaaaaaatagtgaatgaatccttcattcc |
49073350 |
T |
|
| Q |
213 |
tctgacacagtatatatagcatcctcgtgcattcttttccacgtcacccttcaccccttttgtccttttcctagtgtaaactttccacacccttggttga |
312 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49073349 |
tctgacacagtatatatagcatcctcatgcattcttttccacgtcacccttcaccccttttgtccttttcctagtgtaaactttccacacccttggttga |
49073250 |
T |
|
| Q |
313 |
ggcccatagtctaagccctctcaatttgc |
341 |
Q |
| |
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|||||||||||||||||| ||| |||||| |
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| T |
49073249 |
ggcccatagtctaagcccactccatttgc |
49073221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 28510405 - 28510731
Alignment:
| Q |
15 |
atgaaatgatataaaaggatgaaatctgcaattgcaattactaagatccacaattacaggagaataacaaagtatgaaaaactgagtaacaaactggtag |
114 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
28510405 |
atgaaatgatataaaaggatgaaatctgcaattgcaattactaagatccacaattacaggagaatgacaaagtatgaaaaa-tgagtaacaaactggtag |
28510503 |
T |
|
| Q |
115 |
taaactaccagccccaaaagcacgcaggctttccccaaatcacctaatgtgaccccacaagatcttaacagaaaa-atagtgaatgaatccttcattcct |
213 |
Q |
| |
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| ||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28510504 |
tgaactaccagccccaaaagcacacaggcttttcccaaatcacctattgtgaccccacaagatcttaacagaaaaaatagtgaatgaatccttcattcct |
28510603 |
T |
|
| Q |
214 |
ctgacacagtatatatagcatcctcgtgcattcttttccacgtcacccttcaccccttttgtccttttcctagtgtaaactttccacacccttggttgag |
313 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28510604 |
ctgacacagtatatatagcatcctcatgcattcttttccacgtcacccttcaccccttttgtccttttcctagtgtaaactttccacacccttggttgag |
28510703 |
T |
|
| Q |
314 |
gcccatagtctaagccctctcaatttgc |
341 |
Q |
| |
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||||||||||||||||| ||| |||||| |
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| T |
28510704 |
gcccatagtctaagcccactccatttgc |
28510731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 28515374 - 28515700
Alignment:
| Q |
15 |
atgaaatgatataaaaggatgaaatctgcaattgcaattactaagatccacaattacaggagaataacaaagtatgaaaaactgagtaacaaactggtag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
28515374 |
atgaaatgatataaaaggatgaaatctgcaattgcaattactaagatccacaattacaggagaatgacaaagtatgaaaaa-tgagtaacaaactggtag |
28515472 |
T |
|
| Q |
115 |
taaactaccagccccaaaagcacgcaggctttccccaaatcacctaatgtgaccccacaagatcttaacaga-aaaatagtgaatgaatccttcattcct |
213 |
Q |
| |
|
| ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28515473 |
tgaactaccagccccaaaagcacacaggcttttcccaaatcacctattgtgaccccacaagatcttaacagagaaaatagtgaatgaatccttcattcct |
28515572 |
T |
|
| Q |
214 |
ctgacacagtatatatagcatcctcgtgcattcttttccacgtcacccttcaccccttttgtccttttcctagtgtaaactttccacacccttggttgag |
313 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28515573 |
ctgacacagtatatatagcatcctcatgcattcttttccacgtcacccttcaccccttttgtccttttcctagtgtaaactttccacacccttggttgag |
28515672 |
T |
|
| Q |
314 |
gcccatagtctaagccctctcaatttgc |
341 |
Q |
| |
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||||||||||||||||| ||| |||||| |
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| T |
28515673 |
gcccatagtctaagcccactccatttgc |
28515700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 330
Target Start/End: Complemental strand, 16748765 - 16748703
Alignment:
| Q |
268 |
ccttttgtccttttcctagtgtaaactttccacacccttggttgaggcccatagtctaagccc |
330 |
Q |
| |
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|||||||||||||||||||||||||| ||||| || |||| ||||||||||||| |||||| |
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| T |
16748765 |
ccttttgtccttttcctagtgtaaaccttccaaactcttgaaagaggcccatagtccaagccc |
16748703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 330
Target Start/End: Complemental strand, 14919413 - 14919351
Alignment:
| Q |
268 |
ccttttgtccttttcctagtgtaaactttccacacccttggttgaggcccatagtctaagccc |
330 |
Q |
| |
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|||||||||||||||||||||||||| ||||| || |||| ||||||||||||| |||||| |
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| T |
14919413 |
ccttttgtccttttcctagtgtaaaccttccaaactcttgaaagaggcccatagtccaagccc |
14919351 |
T |
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