View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_low_22 (Length: 349)
Name: NF15315_low_22
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 11386488 - 11386817
Alignment:
| Q |
17 |
aaagctttcaataatgagcaaagttgctggtatatatagcaaaccaatgtgaaggaaaaacatgccacaagcgatcaatacatattactttcaagcaacg |
116 |
Q |
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| T |
11386488 |
aaagctttcaataatgagcaaagttgctggtatatatagcaaaccaatgtgaaggaaaaacatgccacaagcgatcaatacatattactttcaagcaacg |
11386587 |
T |
|
| Q |
117 |
tgctaccaattttgtgataagagtaaacattaacagtagcaagtctagcaagttcttcattactgcaaataaatttccaatcaaaatcaaggtcagaagg |
216 |
Q |
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| T |
11386588 |
tgctaccaattttgtgataagagtaaacattaacagtagcaagtctagcaagttcttcattactgcaaataaatttccaatcaaaatcaaggtcagaagg |
11386687 |
T |
|
| Q |
217 |
cctgtactttcgaagatcaagtttattgaccacaaatgcaagttcatcaacgccgcaatagcttaaacgaagcattttcatgagtgtagctgccaagggt |
316 |
Q |
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| T |
11386688 |
cctgtactttcgaagatcaag-ttattgaccacaaatgcaagttcatcaatgccgcaatagcttaaacgaagctttttcatgactgtagctgccaagggt |
11386786 |
T |
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| Q |
317 |
ccaagttcaactgcatttctgcatccaatcc |
347 |
Q |
| |
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| T |
11386787 |
ccaagttcaactgcatttctgcatccaatcc |
11386817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 11392476 - 11392806
Alignment:
| Q |
17 |
aaagctttcaataatgagcaaagttgctggtatatatagcaaaccaatgtgaaggaaaaacatgccacaagcgatcaatacatattactttcaagcaacg |
116 |
Q |
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| T |
11392476 |
aaagctttcaacaattagcaaaattgctggtatatatagcaaaccaatgtgaaggaaaaacaagccatgtgcgatcaatacatattactttcaagcaacg |
11392575 |
T |
|
| Q |
117 |
tgctaccaattttgtgataagagtaaacattaacagtagcaagtctagcaagttcttcattactgcaaataaatttccaatcaaaatcaaggtcagaagg |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
11392576 |
tgctaccaattttgtgataagaataaacattaacagtagcaagtctagcaagttcttcatcactgcaaataaattgccaatcaaaatcaaggtcagaagg |
11392675 |
T |
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| Q |
217 |
cctgtactttcgaagatcaagtttattgaccacaaatgcaagttcatcaacgccgcaatagcttaaacgaagcattttcatgagtgtagctgccaagggt |
316 |
Q |
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|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||| ||| |
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| T |
11392676 |
ccggtacttgcgaagatcaagtttattgaccacaaatgcaagttcatcaacgccgcaatagcttaaacgaggcattttcataagtttagcagccaatggt |
11392775 |
T |
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| Q |
317 |
ccaagttcaactgcatttctgcatccaatcc |
347 |
Q |
| |
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| T |
11392776 |
ccaagttcaactgcatttctgcttccaatcc |
11392806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 213 - 347
Target Start/End: Original strand, 17198194 - 17198328
Alignment:
| Q |
213 |
aaggcctgtactttcgaagatcaagtttattgaccacaaatgcaagttcatcaacgccgcaatagcttaaacgaagcattttcatgagtgtagctgccaa |
312 |
Q |
| |
|
||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| | |||||| || || |||||||| || || || | |
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| T |
17198194 |
aaggcctatacttacgaagatcaagtttatcgaccacaaatgcaagttcatcaacgccacaaaaacttaaatgaggcgcattcatgagagtggcagctag |
17198293 |
T |
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| Q |
313 |
gggtccaagttcaactgcatttctgcatccaatcc |
347 |
Q |
| |
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|| |||||||||||||||||||||||||||||||| |
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| T |
17198294 |
ggttccaagttcaactgcatttctgcatccaatcc |
17198328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 17198103 - 17198155
Alignment:
| Q |
122 |
ccaattttgtgataagagtaaacattaacagtagcaagtctagcaagttcttc |
174 |
Q |
| |
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||||| || |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17198103 |
ccaatcttatgataagagtaaacattaacagtagcaagtttagcaagttcttc |
17198155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 341
Target Start/End: Complemental strand, 38820943 - 38820826
Alignment:
| Q |
224 |
tttcgaagatcaagtttattgaccacaaatgcaagttcatcaacgccgcaatagcttaaacgaagcattttcatgagtgtagctgccaagggtccaagtt |
323 |
Q |
| |
|
|||||||||||||| |||||||| ||| ||||||||||||||||||||| | || |||| | |||| ||| | | |||| |||||||||||||||| |
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| T |
38820943 |
tttcgaagatcaagcttattgacagcaacagcaagttcatcaacgccgcaaaaactcaaactaggcatcttcctaacactagcagccaagggtccaagtt |
38820844 |
T |
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| Q |
324 |
caactgcatttctgcatc |
341 |
Q |
| |
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| || ||||||||||||| |
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| T |
38820843 |
ccacagcatttctgcatc |
38820826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 38818808 - 38818768
Alignment:
| Q |
133 |
ataagagtaaacattaacagtagcaagtctagcaagttctt |
173 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |
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| T |
38818808 |
ataagagtaaacattaacagtagcaagtttagcaagttctt |
38818768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 38814418 - 38814362
Alignment:
| Q |
117 |
tgctaccaattttgtgataagagtaaacattaacagtagcaagtctagcaagttctt |
173 |
Q |
| |
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|||| ||||| |||| |||||| ||||||||||||||||||||| | |||||||||| |
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| T |
38814418 |
tgctcccaatcttgtaataagaataaacattaacagtagcaagtttggcaagttctt |
38814362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 38822975 - 38822923
Alignment:
| Q |
108 |
caagcaacgtgctaccaattttgtgataagagtaaacattaacagtagcaagt |
160 |
Q |
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||||||| || || ||||| |||| ||||||||||||||||||||||||||| |
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| T |
38822975 |
caagcaatgtactcccaatcttgtagtaagagtaaacattaacagtagcaagt |
38822923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 38831431 - 38831395
Alignment:
| Q |
134 |
taagagtaaacattaacagtagcaagtctagcaagtt |
170 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||||| |
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|
| T |
38831431 |
taagagtaaacattaatagtagcaagtttagcaagtt |
38831395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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