View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_low_28 (Length: 279)
Name: NF15315_low_28
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 39195787 - 39195536
Alignment:
| Q |
8 |
cgaagaatatccatgatctttggctctatagttgtggaaatttttgagaaactgtagatttttctgcttaggtgagaattccaatggtttttaatttcat |
107 |
Q |
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| T |
39195787 |
cgaacaatatccatgatctttggctctatagttgtggaaatttttgagaaactgtagatttttctgcttaggtgagaattccaatgatttttaatttcat |
39195688 |
T |
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| Q |
108 |
tgtccgttcttcctggcaagtggctagctatcatggaccacctgaaaatcacacaaacccaataaacttcaaatcataatttcttccttgtgttatatac |
207 |
Q |
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| T |
39195687 |
tgtccgttcttcctggcaagtggctagctatcatggaccacctgaaaatcacacaaacccaataaacttcaaatcataatttcttccttgtgttatatac |
39195588 |
T |
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| Q |
208 |
tagtatattccttttcacttgttttgttccgtaccactttatgaccaaaatg |
259 |
Q |
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| T |
39195587 |
tagtatattccttttcacttgttttgttccgtaccactttatgaccaaaatg |
39195536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 44676862 - 44676922
Alignment:
| Q |
94 |
gtttttaatttcattgtccgttcttcctggcaagtggctagctatcatggaccacctgaaa |
154 |
Q |
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| T |
44676862 |
gtttttaatctcgttgtctgttctgcctggcaagtgacttgcaatcaaggaccacctgaaa |
44676922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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