View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_low_29 (Length: 253)
Name: NF15315_low_29
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_low_29 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 29420924 - 29420685
Alignment:
| Q |
14 |
tcaacatctttcatataattctattaattgattaattaatttttaaatccaaccaatataatcttgcttagtacaactcgatttcattcaagaccatttt |
113 |
Q |
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| T |
29420924 |
tcaacatctttcatataattctattaattgattaattaatttttaaatccaaccaatataatcttgcttagtacaactcgatttcattcaactccattct |
29420825 |
T |
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| Q |
114 |
attttatcaatccaaacatagcctgatttaattttcacgagaacaagaaagttcaacccatagtccattttcttccagcaagtgtgcatcaaattatccc |
213 |
Q |
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| T |
29420824 |
attttatcaatccaaacttagcctgatttaattttcacgagaacaagaaagttcaacccatagtccattttcttccagcaagtgtgcatcaaattatccc |
29420725 |
T |
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| Q |
214 |
ttatctcctacctactcatcctcgttctaaagtagacaac |
253 |
Q |
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| T |
29420724 |
ttatctcctacctactcatcctcgttctaaagcagacaac |
29420685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 239
Target Start/End: Original strand, 29445943 - 29446133
Alignment:
| Q |
54 |
ttttaaatccaaccaatataatcttgcttagtacaactcgatttcattcaagaccattttattttatcaatccaaacatagcc-----tgatttaatttt |
148 |
Q |
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| T |
29445943 |
ttttaaatccaaacaatattatcttgtttaataccacttgatttcatttcactccattctaatccatcaatccaaacatagatcttagtggtttaatttt |
29446042 |
T |
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| Q |
149 |
cacgagaacaagaaagttcaacccatagtccattttcttccagcaagtgtgcatcaaattatcccttatctcctacctactcatcctcgtt |
239 |
Q |
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| T |
29446043 |
catgagaacaagaaagttcaatccatagcctgttttcttcaagcaaatgtgcatcaaattatcccttatctcctacctactcatcctcgtt |
29446133 |
T |
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