View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15315_low_3 (Length: 737)

Name: NF15315_low_3
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15315_low_3
NF15315_low_3
[»] chr1 (1 HSPs)
chr1 (17-719)||(16509430-16510117)


Alignment Details
Target: chr1 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 17 - 719
Target Start/End: Complemental strand, 16510117 - 16509430
Alignment:
Q  17 gaacaatccattgaaacttatacgacgtatgcggattcggaaaatcaaaataaataatctcattatcaaccaatcttctcactcctttagcagtagaagt 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16510117 gaacgatccattgaaacttatacgacgtatgcggattcggaaaatcaaaataaataatctcattatccaccaatcttctcactcctttagcagtagaagt 16510018  T
Q  117 agcaatctcaatcttccttcccaacaatgaccacccaggctcaacaggaaactcaccatcctcgagattcggaatcagaatcttcttctcctcaactacc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| |||||||||    
T  16510017 agcaatctcaatcttccttcccaacaatgaccacccaggctcaacaggaaactcaccatcctcaagattcggaatctggatcttcttctcttcaactacc 16509918  T
Q  217 tccttcttcaccaccttcaaaaccctaacttcatcactcacagctgctttccctttcaccaccttcaacacttccacttcatcatcacaaacggttttct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16509917 tccttcttcaccaccttcaaaaccctaacttcatcactcacagcttctttccccttcaccaccttcaacacttccacttcatcatcacaaacggttttct 16509818  T
Q  317 tctctgcacaaaccggttcagccaatgttggttgtttaactggttcaaccttaaccggttcaaccttaaccggctcaaccttaaccggttcaaccataac 416  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||               |||||||| |||||||    
T  16509817 tctctgcacaaaccggttcagccaatgttggttgtttaaccggtccaaccttaaccggttcaaccttaa---------------ccggttcagccataac 16509733  T
Q  417 cgattcttgtgtatcgcaaaccacattgagattaggaacttcatccaatgatttcaccgattcttgcgtctcgaaaaccacatcaacatcagaactttct 516  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  16509732 cgattcttgtgtatcgcaaaccacattgagattaggaacttcttccattgatttcaccgattcttgcgtctcaaaaactacatcaacatcagaactttct 16509633  T
Q  517 accttcgtttgaaccgttgattcagcctccattgatttcatcgattcatcaacagaagcaactttcgtgttcgtagctttcaaaaaatcatcgaacgcaa 616  Q
    |||||| |||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16509632 accttcatttgaatcgttgattcagcttccattgatttcaacgattcatcaacagaagcaactttcgtgttcgtagctttcaaaaaatcatcgaacgcaa 16509533  T
Q  617 gcatcgaacgtggttcatcagattccgtcttacactccaccaccgtctccgccgccggaggttgaaaagcgacggtgacagattttgcctcatcttcaaa 716  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16509532 gcatcgaacgtcgttcatcagattccgtcttacactccaccaccgtctccgccgccggaggttgaaaagcgacggtgacagattttgcctcatcttcaaa 16509433  T

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