View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_low_34 (Length: 224)
Name: NF15315_low_34
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_low_34 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 34441496 - 34441288
Alignment:
| Q |
16 |
taacaaaggaaatatatgaaccttttttggttctgtgaagctattctcatcaagtatattttgagacgcgagaacggtctttgttgacccagctaagttt |
115 |
Q |
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| T |
34441496 |
taacaaaggaaatatatgaaccttttttggttctgtgaagctattctcatcaagtatattttgagacgcgagaacggtctttgttgacccagctaggttt |
34441397 |
T |
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| Q |
116 |
ttgctcacatatccttgaagagaaatcttgagattcacttggttgttccctaggtttgcaatctgaagaatcaattgtgtttcaccatcatgagacaata |
215 |
Q |
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| T |
34441396 |
ttgctcacatatccttgaagagaaatcttgagattcacttggttgttccctaggtttgcaatctgaagaatcaattgtgtttcaccatcatgagacaata |
34441297 |
T |
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| Q |
216 |
ttgaatttg |
224 |
Q |
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| T |
34441296 |
ttgaatttg |
34441288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 34467216 - 34467025
Alignment:
| Q |
27 |
atatatgaaccttttttggttctgtgaagctattctcatcaagtatattttgagacgcgagaacggtctttgttgacccagctaagtttttgctcacata |
126 |
Q |
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|||||| ||||||||||||| ||| |||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
34467216 |
atatattaaccttttttggtgctgcgaaggtattctcatcaagtatatttccagacgtgagaacggtcttcgttgacccagctaggtttttgctcacata |
34467117 |
T |
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| Q |
127 |
tccttgaagagaaatcttgagattcacttggttgttccctaggtttgcaatctgaagaatcaattgtgtttcaccatcatgagacaatattg |
218 |
Q |
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| T |
34467116 |
tccttgaagagaaatcttgagattcactgggatgcttcctatgtttgcaatctgaagagtcaattgcattgcaacatcatcagacaatattg |
34467025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 34451302 - 34451104
Alignment:
| Q |
16 |
taacaaaggaaatatatgaaccttttttggttctgtgaagctattctcatcaagtatattttgagacgcgagaacggtctttgttgacccagctaagttt |
115 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | | |||||| |||||||||||||| || |||| |
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| T |
34451302 |
taacagaggaaatatatgaaccttttttggttctgcgaagctattctcatcaagttcatttcca---gtgagaacagtctttgttgacccttttaggttt |
34451206 |
T |
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| Q |
116 |
ttgctcacatatccttgaagagaaatcttgagattcacttggttgttccctaggtttgcaatctgaagaatcaattgtgtttcaccatcatgagacaata |
215 |
Q |
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| T |
34451205 |
ttgctcgcaaatccctgaatagaaatcttgaaatccacttgggttttccgcatgtttgcaatctacgaaatcaattgcgttgcagcatcatgagacaata |
34451106 |
T |
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