View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_low_35 (Length: 221)
Name: NF15315_low_35
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 2309819 - 2309688
Alignment:
| Q |
1 |
cgtttcgtgtaaggaacagtttcagaagagtaaaatctcttaggtcctccgatgataaatggattgtgaaatttgttgttgatttcaacactttttgttg |
100 |
Q |
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| T |
2309819 |
cgtttcgtgtaaggaacagtttcagaagagtaaaatctcttaggtcctccgatgataaatggattgtgaaatttgttgttgatttcaacactttttgttg |
2309720 |
T |
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| Q |
101 |
tgcctaatctgtaggaaaatgctatgaatcag |
132 |
Q |
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| T |
2309719 |
tgcctaatctgtaggaaaatgctatgaatcag |
2309688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2929225 - 2929356
Alignment:
| Q |
1 |
cgtttcgtgtaaggaacagtttcaga---agagtaaaatctcttaggtcctccgatgataaatggattgtgaaatttgttgttgatttcaacactttttg |
97 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| || ||| |
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| T |
2929225 |
cgtttcgtgtaaggaacagtttcaaataaagagtaaaatctcttgggtcctccaatgacaaatggattgtgaaatttgttgttgatttcaacatttcttg |
2929324 |
T |
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| Q |
98 |
ttgtgcctaatctgtaggaaaatgctatgaat |
129 |
Q |
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|||||||| |||||| ||||||||||||||| |
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| T |
2929325 |
ttgtgcctgatctgttagaaaatgctatgaat |
2929356 |
T |
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