View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15315_low_40 (Length: 203)
Name: NF15315_low_40
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_low_40 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 179; Significance: 8e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 25908738 - 25908924
Alignment:
| Q |
1 |
aaggctggtaatgaggaagaagaggacaaccaagataacacctctgggtcaggagacgaaacggtaaatagacgtcataaaaagagtaaaatatactttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25908738 |
aaggctggtaatgaggaagaagaggacaaccaagataacacctctgggtcaggagacaaaacggtaaatagacgtcataaaaagagtaaaatatactttg |
25908837 |
T |
|
| Q |
101 |
atagtgacagtgatgagggtgaaagaaaagaagcttcaaggaaacaaacggaagatcaagaagagttggctttgaggttgttacaat |
187 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25908838 |
atagtgacaatgatgagggtgaaagaaaagaagcttcaaggaaacaaacggaagatcaagaagagttggctttgaggttgttacaat |
25908924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 40422290 - 40422101
Alignment:
| Q |
1 |
aaggctggtaatgaggaagaagaggacaaccaagataacacctctgggtcag---gagacgaaacggtaaatagacgtcataaaaagagtaaaatatact |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
40422290 |
aaggctggtaatgaggaagaagaggacaaccaagatgatacctctgggtcagaaggagacgaaccgataaatagacgtcataaaaagagtaaaatatact |
40422191 |
T |
|
| Q |
98 |
ttgatagtgacagtgatgagggtgaaagaaaagaagcttcaaggaaacaaacggaagatcaagaagagttggctttgaggttgttacaat |
187 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40422190 |
ttgacagtgacagtgatgagggtcaaagaaaagaagcttcaagaagacaaacggaagatcaagaagagttggctttgaagttgttacaat |
40422101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University