View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_low_5 (Length: 541)
Name: NF15315_low_5
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 521
Target Start/End: Complemental strand, 45939724 - 45939220
Alignment:
| Q |
16 |
atctgtattaataaacacaataataacaccaataatttgtaaacaatgttggatagtataatatactatctcttgcaacaaatgatctcaatcattaacc |
115 |
Q |
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| T |
45939724 |
atctgtattaataaacacaataataacaccaataagttgtaaacaatgttggatagtataatatactatctcttgtaacaaatgatctcaaccattaacc |
45939625 |
T |
|
| Q |
116 |
ctggataatactactcatatcccacaatnnnnnnnttaggtttaaactatctcaattgctcaattgaaataggatgttccggatcattgacggtgtgatg |
215 |
Q |
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| T |
45939624 |
ctggataatactactcatatcccacagtaaaaaaactaggtttaaactatctcacttgctcaattgaaataggatgttccggatcattgacggtgtgatg |
45939525 |
T |
|
| Q |
216 |
caactattgtaccnnnnnnnnnn-gatacgttgtttgtccaacatattttaacgcctaaaattgactttcatgtaaacttttcttatgttaggttagaga |
314 |
Q |
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| T |
45939524 |
caactattgtaccaaaaaaaaaaagatacgttgtttgtccaacatattttaacgcctaaaattgactttcatgtaaactttt----tcttatgttagaga |
45939429 |
T |
|
| Q |
315 |
aactacataaaaatcatgagttttacaaaaggaaaatgttgtagatcgcgacaaaattccaaacgaaattatcacgaccagctttgtattatgtaccttg |
414 |
Q |
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| T |
45939428 |
aactacataaaaatcatgagtt--acaaaaggaaaatgttgtagatcgcgacaaaattccaaacgaaattatcacgaccagctttgtattatgtaccttg |
45939331 |
T |
|
| Q |
415 |
atattgtagcatgatgtcatcttttattcca----accatccttgatatatggtaaaaaagatccaacgaccaccttttattcactaactctagtgaaat |
510 |
Q |
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| T |
45939330 |
atattgtagcatgatgtcatcttttattccaaccaaccatccttgatatatggtaaagaagatccaacgaccaccttttattcactaactctagtgaaat |
45939231 |
T |
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| Q |
511 |
tacttctcgct |
521 |
Q |
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||||||||||| |
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| T |
45939230 |
tacttctcgct |
45939220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 409
Target Start/End: Original strand, 33314852 - 33314919
Alignment:
| Q |
342 |
aaaggaaaatgttgtagatcgcgacaaaattccaaacgaaattatcacgaccagctttgtattatgta |
409 |
Q |
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|||| ||||||||||||||| |||||||||| ||| |||||||||||||| || ||||||||| |||| |
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| T |
33314852 |
aaagaaaaatgttgtagatcccgacaaaatttcaagcgaaattatcacgaacacctttgtattgtgta |
33314919 |
T |
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