View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_low_6 (Length: 538)
Name: NF15315_low_6
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_low_6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Complemental strand, 13748803 - 13748263
Alignment:
| Q |
1 |
tcaggcgaggctgattcaaaacatgaagctgaagggaaatttccattgaatcaaga---caatgtcttgatgaatgatgaaaataagtcagaaaaggaac |
97 |
Q |
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| T |
13748803 |
tcaggccagactgaatcaaaacatgaacctgaaggagaaattccattgcatcaagaagacaatgtcttgctgaatgatgtaaagaagtcagaaaaggaac |
13748704 |
T |
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| Q |
98 |
atactggttttttagaagatgcagtaaattcaggtgaggagcttaacattgccaataacatagaagataaggtaacatcggataccaagttcaaggtaac |
197 |
Q |
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| T |
13748703 |
atactggtttgttagaagatgcagtaaattcaggtgaggagcttaacattgccaataacatagaagataaggtaacatcggataccaagttcaaggtaac |
13748604 |
T |
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| Q |
198 |
tgattcaccacaaaatggtgtacagcaacaaccaagccttatctcacaaaatggtctagacacagaaaataatcttaaggtcactagtaccttagaaatg |
297 |
Q |
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| T |
13748603 |
tgattcaccacaaaatggtgtacagcaacaaccaagccttatctcacaaaatggtctagacacagaaaataatcttaaggtcactagtaccttagaaatg |
13748504 |
T |
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| Q |
298 |
gaaggagcgaccgcagtggaaaacaaacctctaaaagagttaacagatcaagagaagactcttaaccttggtaatagtgatggaaaagagacagtttcta |
397 |
Q |
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| T |
13748503 |
gaaggagcgaccgcagtggaaaacaaacctctaaaagagttaacagatcaagagaagactctcaaccttggtaatagtgatggaaaagagacagttgcta |
13748404 |
T |
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| Q |
398 |
tgagtacaattacaactaccgaaaatcaggaagtcggtcagcaccaaacaagcaacaaggcagatcatagttcttcggagagttttgagaaactgcaaga |
497 |
Q |
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| T |
13748403 |
tgagtacaattacaactaccgaaaatcaggaagtcggtcagcaccaaacaagcaacaaggcagatcatagttcttcggagagttttaagaaactgcaaga |
13748304 |
T |
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| Q |
498 |
aaatgatgtcaaacaagatccatctaagacggggaataatc |
538 |
Q |
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| T |
13748303 |
aaatgatgtcaaacaagatccatctaagacggggaataatc |
13748263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 13749187 - 13749060
Alignment:
| Q |
1 |
tcaggcgaggctgattcaaaacatgaagctgaagggaaatttccattgaatcaagacaatgtcttgatgaatgatgaaaataagtcagaaaaggaacata |
100 |
Q |
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| T |
13749187 |
tcaggcgaggctgattcaaaacatgaagctgaagggaaagttccattgaatcaagacaatgtcttgatgaatgatgaaaataagtcagaaaaggaacata |
13749088 |
T |
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| Q |
101 |
ctggttttttagaagatgcagtaaattc |
128 |
Q |
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| T |
13749087 |
ctggtttgttagaagatgcattaaattc |
13749060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 13748995 - 13748866
Alignment:
| Q |
1 |
tcaggcgaggctgattcaaaacatgaagctgaagggaaatttccattgaatcaagacaatgtcttgatgaatgatgaaaataagtcagaaaaggaacata |
100 |
Q |
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| T |
13748995 |
tcaggccaagctgaatcaaaacatgaacctgaaggaaaagttcctttgaatcaagacaatgccttgctgaatgatgtaacgaagtcagaaaaggaacaaa |
13748896 |
T |
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| Q |
101 |
ctggttttttagaagatgcagtaaattcag |
130 |
Q |
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| T |
13748895 |
atggtttgttagaagatgcaataaattcag |
13748866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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