View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_low_7 (Length: 520)
Name: NF15315_low_7
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 164 - 344
Target Start/End: Original strand, 43052237 - 43052417
Alignment:
| Q |
164 |
atatggtctgtatttcacattgcaaccctgaatcgggagttgttgcagataataacaatttgagattttaaaagttgtctattgtttgtaagtttaactc |
263 |
Q |
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| T |
43052237 |
atatggtctgtatttcacattgcaaccctgaatcgggagttgttgcagataataacaatttgagattttaaaagttgtctattgtttgtaagtttaactc |
43052336 |
T |
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| Q |
264 |
tgtcgtcaatcataataaaatcttattgaatggcttgctaacaaaatgcattttcttgttccatggagatttattattagg |
344 |
Q |
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| T |
43052337 |
tgtcgtcaatcataataaaatcttattgaatggcttgcaaacaaaatgcattttcttgttccatggagatttattattagg |
43052417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 43052076 - 43052206
Alignment:
| Q |
12 |
gaacctgtgactcctggacaatgcaacatggttgttgagaggttgggagattacctcattgatcagggcctgtagacacgggactc--tgatgatttcat |
109 |
Q |
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| T |
43052076 |
gaacctgtgactcctggacaatgcaacatggttgttgagaggttgggagattacctcattgatcagggcctgtagacacgggactctatgatgatttcat |
43052175 |
T |
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| Q |
110 |
catctgtttcttaattggaaactattctttg |
140 |
Q |
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| T |
43052176 |
catctgtttcttaattggaaactattctttg |
43052206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 391 - 505
Target Start/End: Original strand, 43052453 - 43052567
Alignment:
| Q |
391 |
tctaatgcagttgttgggaatttaatcataatgatcagtattcagtagccctcctccaaccacgtttagaaattcctctctgagacaacatttagaagaa |
490 |
Q |
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| T |
43052453 |
tctaatgcagatgttaggaatttaatcataatgatcagtattcagtagccctcctccaaccacgtttagaaattcctctctgagacaacatttagaagaa |
43052552 |
T |
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| Q |
491 |
attaatcatagatgt |
505 |
Q |
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| T |
43052553 |
attaatcatagatgt |
43052567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 34172425 - 34172368
Alignment:
| Q |
11 |
agaacctgtgactcctggacaatgcaacatggttgttgagaggttgggagattacctc |
68 |
Q |
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| T |
34172425 |
agaacctgttactcctggacagtgcaacatggttgttgagaggttgggagattacctc |
34172368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 34107538 - 34107504
Alignment:
| Q |
21 |
actcctggacaatgcaacatggttgttgagaggtt |
55 |
Q |
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| T |
34107538 |
actcctggacaatgcaacatggttgttaagaggtt |
34107504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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