View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_low_8 (Length: 496)
Name: NF15315_low_8
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 5 - 456
Target Start/End: Complemental strand, 7017914 - 7017463
Alignment:
| Q |
5 |
caaatgaaatacgcacttctattttacgtcaagttaaagatatattcaattttttctatacactttatttgtatgatgtaagattttttaatgaatgaaa |
104 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| || |
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| T |
7017914 |
caaatgaaataaacacttctattttacatcaagttaaagatatattcaattttttctatacactttatttgaatgatgtaagattttttcatgaatgtaa |
7017815 |
T |
|
| Q |
105 |
gcgaagcattaaatatgaagaatagggattcatcctactttgagaaattggannnnnnnaaggtgagcaaactcgtatcattcccataagaataaaatta |
204 |
Q |
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| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
7017814 |
gagaagtattaaatatgaagaatagggattcatcctactttgagaaactggattttttttaggtaagcaaactcgtatcattcccataagaataaaatta |
7017715 |
T |
|
| Q |
205 |
tgaacaaataatccacattacgggtcattttagtagcttgtannnnnnncttccattaaaccatattgctagaattcttatgcagggtctgtctcgagtc |
304 |
Q |
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||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7017714 |
tgaacaaataatccacattacagttcattttagtagcttgtatttttttcttccattaaaccatattgctagaattcttatgcagggtctgtctcgagtc |
7017615 |
T |
|
| Q |
305 |
gtaacatttttgtgtgccactgctgcaagaaaacactggtttggtggcccatagtatttgtactttcatttgtacctctccataatcgcaagttgcagct |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7017614 |
ataacatttttgtgtgccactgctgcaagaaaacactggtttggtggcccatagtagttgtactttcttttgtacctctccataatcgcaagttgcagct |
7017515 |
T |
|
| Q |
405 |
ccatatcagcaccactaactacgctcaacatgtgataatgatgctgcggatt |
456 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7017514 |
ccatattagcaccactaactacgctcaacatgtgataatgatgatgcggatt |
7017463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 5 - 465
Target Start/End: Original strand, 48844929 - 48845387
Alignment:
| Q |
5 |
caaatgaaatacgcacttctattttacgtcaagttaaagatatattcaattttttctatacactttatttgtatgatgtaagattttttaatgaatgaaa |
104 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| || |
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| T |
48844929 |
caaatgaaataaacacttctattttacatcaagttaaagatatattcaattttttctatacactttatttgaatgctgtaagattttttcatgaatgtaa |
48845028 |
T |
|
| Q |
105 |
gcgaagcattaaatatgaagaatagggattcatcctactttgagaaattggannnnnnnaaggtgagcaaactcgtatcattcccataagaataaaatta |
204 |
Q |
| |
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| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
48845029 |
gagaagtattaaatatgaagaatagggattcatcctactttgagaaactggattttttttaggtaagcaaactcgtatcattcccataagaataaaatta |
48845128 |
T |
|
| Q |
205 |
tgaacaaataatccacattacgggtcattttagtagcttgtannnnnnncttccattaaaccatattgctagaattcttatgcagggtctgtctcgagtc |
304 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48845129 |
tgaacaaaaaatccacattacggttcattttagtagcttgtatttttttcttccattaaaccatattgctagaattcttatgcagggtctgtctcgagtc |
48845228 |
T |
|
| Q |
305 |
gtaacatttttgtgtgccactgctgcaagaaaacactggtttggtggcccatagtatttgtactttcatttgtacctctccataatcgcaagttgcagct |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48845229 |
gtaacatttttgtgtgccactgctgcaagaaaacactggtttggtggcccatagtagttgtactttcatttgtacctctccataatcgcaagttgtagct |
48845328 |
T |
|
| Q |
405 |
ccatatcagcaccactaactacgctcaacatgtgataatgatgctgcggattagagaaata |
465 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||| || ||||| |
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|
| T |
48845329 |
ccatatcagcaccattaact--gctcaacatgtgataatgatgctgcggatttgaaaaata |
48845387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 19535159 - 19535213
Alignment:
| Q |
402 |
gctccatatcagcaccactaactacgctcaacatgtgataatgatgctgcggatt |
456 |
Q |
| |
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|||| ||| |||||||||| |||| ||||||||||||||| ||||||||| |||| |
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| T |
19535159 |
gctctatagcagcaccactcactaagctcaacatgtgatagtgatgctgcagatt |
19535213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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