View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15315_low_9 (Length: 484)
Name: NF15315_low_9
Description: NF15315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15315_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Complemental strand, 40642552 - 40642092
Alignment:
| Q |
17 |
atgttgaaggtcaagaaatgaatttggagactcctccaagccgtgtggagactcttgatgatgaggagacggacaatgagtgtactagtcctttgacgaa |
116 |
Q |
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| T |
40642552 |
atgttgaaggtcaagagatgaattcggagactcctccaagccgtgtggagactcttgatgatgaggagacggtcaatgagtgtactagtcctttgacgaa |
40642453 |
T |
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| Q |
117 |
gagaggaaaaaagatgaaaatgctccagataaatctcctttgaannnnnnnc---aaaacaaaatctctttcgaaaactaagacactaggacatgggata |
213 |
Q |
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| T |
40642452 |
gagagaaaaaaagatgaaaatgctccagataaatctcctttgaattttttttcaaaaaacaaaatctctttcgaaaactaagacactaggacatgggata |
40642353 |
T |
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| Q |
214 |
cataaggacatttggtaaaatctttgattattttctgtgcaagtaatgccattttgaggaatcattaaattttttgagaaatgtgttgccaaagattgct |
313 |
Q |
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| T |
40642352 |
cataagggcatttggtaaaatctttgattattttctgggcaagtaatgccattttgaggaatcattaaattttttgagaaatgtgttgctaaagattgct |
40642253 |
T |
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| Q |
314 |
cttgtgggatggaatttgatattttttgaactctttcaaatcacaaagcaaaagttagaggaaaagcatttgaattgccttattatcctaatgtatttac |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |||||||||||||| | |
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| T |
40642252 |
cttgtgggatggaatttgatattttttgaactctttcaaatcacagagcaaaagtcagagtaaaagcatttgaattgccttatcatcctaatgtatttgc |
40642153 |
T |
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| Q |
414 |
aagagaagatgaatgtcagaaacacgctatagtttgtcgaagagtctacaatttccctttg |
474 |
Q |
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| T |
40642152 |
aagagaagatgaatgtcagaaacacgctatagtttgtcgaagagtctacaatttccctttg |
40642092 |
T |
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