View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15316_high_1 (Length: 436)
Name: NF15316_high_1
Description: NF15316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15316_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Original strand, 7524620 - 7525027
Alignment:
| Q |
13 |
caaaggcaccaatagcaatcgaatcacgataataatgaggcgcataaccactagaaccaaccgaaagcgaaatcacatgaaccccatcagcaacagcttc |
112 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7524620 |
caaaagcaccgatagcaatcgaatcacgataataatgaggcgcataaccattagaaccaaccgaaagtgaaatcacatgaaccccatcagcaacagcttc |
7524719 |
T |
|
| Q |
113 |
atccatagcagcaagaatatcagaatcaaaacaaccaagtttccaacagattttataagcagcaattctagcttttgttgccattcccttagcttcgcct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7524720 |
atccatagcagcaagaatatcagaatcaaaacaaccaagtttccaacagattttataagcagcaattctagcttttgttgccattcccttagcttcgcct |
7524819 |
T |
|
| Q |
213 |
ctagcgaaaccaaacaaactagcattaccaacaactgatccagctgctgttgaagctgtatgtgttccatgtccttcagtatctctaggagatttggatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7524820 |
ctagcgaaaccaaacaaactagcattaccaacaactgatccagctgctgttgaagctgtatgtgttccatgtccttcagtatctctaggagatttggatt |
7524919 |
T |
|
| Q |
313 |
ccacagtttcatcaataggtcgccgaagatatgcttcatagcctttataaaaagctttcgctccgataatcttggagttagagttacatgaagaagaagg |
412 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7524920 |
ccacagtttcatcgataggtcgctgaagatatgcttcatagcctttataaaaagctttcgctccgataatcttggagttagagttacatgaagaagaagg |
7525019 |
T |
|
| Q |
413 |
aaaatctt |
420 |
Q |
| |
|
|||||||| |
|
|
| T |
7525020 |
aaaatctt |
7525027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University