View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15316_high_7 (Length: 266)
Name: NF15316_high_7
Description: NF15316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15316_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 30380396 - 30380636
Alignment:
| Q |
10 |
aagaatatgataaatcagtttataacaccaaaatcccaaacaaatgaatcttccaccgtaatcacaaattcaagtgactaagtgtaacaaatcatatttg |
109 |
Q |
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| T |
30380396 |
aagaatatgataaatcagtttataacaccaaaatcccaaacaaatgaatcttccaccgtaatcacaaattcaagtgactaagtgtaacaaatcatatttg |
30380495 |
T |
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| Q |
110 |
ataatattcagaataaataattaaataatgtttggcgattattgtttaactaactaaagcataaaagaacccaatagnnnnnnnntatagtaacgacgtt |
209 |
Q |
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| T |
30380496 |
atattattcagaataaataataaaataatgtttggcgattattgtttaactaactaaagcataaaagaacccaataggaaaaaaatatagtaacgaggtt |
30380595 |
T |
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| Q |
210 |
acctgattagaaatttagaatgatgaaggagaaagaagaaagcataaag |
258 |
Q |
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| T |
30380596 |
acctga--------ttagaatgatgaaggagaaagaagaaagcataaag |
30380636 |
T |
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