View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15316_low_1 (Length: 597)
Name: NF15316_low_1
Description: NF15316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15316_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 17 - 597
Target Start/End: Original strand, 52070961 - 52071541
Alignment:
| Q |
17 |
gaagtgaaataatgaaggttgttagtcacatttttctcatcaacaaagctacattctgtccagttcttgagaatctcatccgaaaacataggagtctggt |
116 |
Q |
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| T |
52070961 |
gaagtaaaataatgaaggttgttagtcacatttttctcatcaacaaaactacattctgtccagttcttgagaatctcatccgaaaacataggagtctggt |
52071060 |
T |
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| Q |
117 |
cagaacaaggtgacaataactcattgtaatcaaaattgcatgcagttgaaaaatccgagttcaaaagttcggataagctaatatcatgatctcccatgtt |
216 |
Q |
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| T |
52071061 |
cagaacaaggtgacaataactcattgtaatcaaaattgcatgcagttgaaaaatccgagttcaaaagttcggataagctaatatcatgatctcccatgtt |
52071160 |
T |
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| Q |
217 |
aaaatcaactagcaaatctgtggatagtccttttttcgcatctgaaaatgacaaaaattcattaccattctccatttggttgttactcattgaatcacta |
316 |
Q |
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| T |
52071161 |
aaaatcaactagcaaatctgtggatagtccttttttcgcatctgaaaatgacaaaaattcattaccattctccatttggttgttactcattgaatcacta |
52071260 |
T |
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| Q |
317 |
tccctgctatcaacatgcattgatggctttgtttttgtctctgtctcaactttgttctgcaaattctgcattgttgatgagttagggagtgaattcatga |
416 |
Q |
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| T |
52071261 |
tccctgctatcaacatgcattgatggctttgtttttgtctctgtctcaactttgttctgcaaattctgcattgttgatgagttagggagtgaattcatga |
52071360 |
T |
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| Q |
417 |
ataataccttagagcacttggtagcttttgtacgaacaacatgtgagtttggcaccattggtttaggattgttctgtttatgtgcgatctttgcattttt |
516 |
Q |
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| T |
52071361 |
ataataccttagagcacttggtagcttttgtacgaacaacatgtgagtttggcaccattggtttaggattgttctgtttatgtgcgatctttgcattttt |
52071460 |
T |
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| Q |
517 |
tggagtagagttgttggtgttttgttgttggagatctttaaccttttttcctaaattcgtgttccaataattcttgatttc |
597 |
Q |
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| T |
52071461 |
tggagtagagttgttggtgttttgttgttggagatctttaaccttttttcctaaattcgtgttccaataattcttgatttc |
52071541 |
T |
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