View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15316_low_3 (Length: 402)
Name: NF15316_low_3
Description: NF15316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15316_low_3 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 6947502 - 6947872
Alignment:
| Q |
19 |
agtaacagctcccaacattctgcatccccgttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6947502 |
agtaacagctcccaacattctgcatccccgttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagta |
6947601 |
T |
|
| Q |
119 |
gattcaagtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgtttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6947602 |
gattcaagtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgtttt |
6947701 |
T |
|
| Q |
219 |
aaggtcaaaatgctcctctatcttgtcgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattggaacc |
318 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6947702 |
aaggtcaaaatgctcctctatcttgttgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgattattggaacc |
6947801 |
T |
|
| Q |
319 |
tggttgccactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccatatat |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6947802 |
tggttgccactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccatatat |
6947872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 8454887 - 8455257
Alignment:
| Q |
19 |
agtaacagctcccaacattctgcatccccgttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagta |
118 |
Q |
| |
|
||||||| |||||||| ||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
8454887 |
agtaacaactcccaacgttccgcatccccgttccagatatcgtctaaaacaagcaaatatttcttgcccattagcatgtattggagttgatgttggagta |
8454986 |
T |
|
| Q |
119 |
gattcaagtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgtttt |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
8454987 |
gatttaagtcttcaccatctgctgaagaattaaacgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacatagacccatgcttt |
8455086 |
T |
|
| Q |
219 |
aaggtcaaaatgctcctctatcttgtcgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattggaacc |
318 |
Q |
| |
|
||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8455087 |
aagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatccctcctaaaccgactatgctgattattggaacc |
8455186 |
T |
|
| Q |
319 |
tggttgccactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccatatat |
389 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| || ||||||||| |||||| ||||||||| |
|
|
| T |
8455187 |
tggttgccactatcattgcctgcaagtaaaaacttgattaatttttccttatcaacatctcgaccatatat |
8455257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 26 - 389
Target Start/End: Original strand, 6736230 - 6736593
Alignment:
| Q |
26 |
gctcccaacattctgcatccccgttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagtagattcaa |
125 |
Q |
| |
|
|||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6736230 |
gctcccaatattctacactcccattccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagttgattcaa |
6736329 |
T |
|
| Q |
126 |
gtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgttttaaggtca |
225 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||| |||||| ||| |
|
|
| T |
6736330 |
gtcttcaccatctgctgaaggattaaatgacttgagaattgctttggtgagtccaaaaacatcgaaagattctgaaacatagacccatgctttaagttca |
6736429 |
T |
|
| Q |
226 |
aaatgctcctctatcttgtcgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattggaacctggttgc |
325 |
Q |
| |
|
||||||| || |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6736430 |
aaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctaattattggaacctggttgc |
6736529 |
T |
|
| Q |
326 |
cactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccatatat |
389 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
6736530 |
cactgtcattgcctgtaagtaaaaacttgattagtttttccttatcatcatctctaccatatat |
6736593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 8589962 - 8590332
Alignment:
| Q |
19 |
agtaacagctcccaacattctgcatccccgttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagta |
118 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| || ||| ||||| || | |||||||||||||| |
|
|
| T |
8589962 |
agtaactgctcccaacattctgcattcccgttccagatatcgtctaaaacaagcaagtatttcttgcctgttagtatgtgctgcaattgatgttggagta |
8590061 |
T |
|
| Q |
119 |
gattcaagtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgtttt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
8590062 |
gattcaagtcttcaccatctgctgaagaattaaatgaattgataattgctttggtgagtccaacaacatcaaaagattcagaaacatagacccatgcttt |
8590161 |
T |
|
| Q |
219 |
aaggtcaaaatgctcctctatcttgtcgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattggaacc |
318 |
Q |
| |
|
||| ||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8590162 |
aagctcaaaatgctcttctatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattggaacg |
8590261 |
T |
|
| Q |
319 |
tggttgccactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccatatat |
389 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| || | ||||||| |||||||||||||||| |
|
|
| T |
8590262 |
cggttgccactatcattgcctgcaagtaaaaacttgattagttttttcttatcaacatctctaccatatat |
8590332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 26 - 389
Target Start/End: Complemental strand, 6554227 - 6553864
Alignment:
| Q |
26 |
gctcccaacattctgcatccccgttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagtagattcaa |
125 |
Q |
| |
|
|||||||| ||||| || ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||| |
|
|
| T |
6554227 |
gctcccaatattctacactcccattccatatatcatctaaaacaagcaagtatttctttcccattagcatgtcttggagttgatgttggagttgatccaa |
6554128 |
T |
|
| Q |
126 |
gtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgttttaaggtca |
225 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||| |||||| ||| |
|
|
| T |
6554127 |
gtattcaccatctgctgaaggattaaatgacttgagaattgctttggtgagtccaaaaacatcgaaagattctgaaacatagacccatgctttaagttca |
6554028 |
T |
|
| Q |
226 |
aaatgctcctctatcttgtcgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattggaacctggttgc |
325 |
Q |
| |
|
||||||| || |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
6554027 |
aaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgattattggaacccggttgc |
6553928 |
T |
|
| Q |
326 |
cactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccatatat |
389 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||| || ||||||||| |||| ||||||||||| |
|
|
| T |
6553927 |
caccgtcattgccttcaagtaaaaacttgattaatttttccttatcaacatccctaccatatat |
6553864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 6479778 - 6479408
Alignment:
| Q |
19 |
agtaacagctcccaacattctgcatccccgttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagta |
118 |
Q |
| |
|
|||||| |||||||| | ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6479778 |
agtaactgctcccaatactctacattcccattccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagtt |
6479679 |
T |
|
| Q |
119 |
gattcaagtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgtttt |
218 |
Q |
| |
|
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||| |
|
|
| T |
6479678 |
gatccaagtattcaccatctgctgaaggattaaatgacttgagaattgctttggtgagtccaacaacatcataagattctgaaacatagacccatgcttt |
6479579 |
T |
|
| Q |
219 |
aaggtcaaaatgctcctctatcttgtcgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattggaacc |
318 |
Q |
| |
|
||| |||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
6479578 |
aagttcaaaatgttcctctatcttgttgttgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccaactatgctgattatcggaacc |
6479479 |
T |
|
| Q |
319 |
tggttgccactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccatatat |
389 |
Q |
| |
|
||| | |||||||||||||||||||||||||| ||||| | | ||||| ||| ||||||| |||||||| |
|
|
| T |
6479478 |
tgggttccactgtcattgcctgcaagtaaaaatttgataagttcttccttgtcaacatctctgccatatat |
6479408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 49 - 349
Target Start/End: Complemental strand, 6519928 - 6519628
Alignment:
| Q |
49 |
ttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagtagattcaagtcttcaccatctgctgaagaat |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||| ||| ||||| ||||||||||||||||| || |
|
|
| T |
6519928 |
ttccagatatcatctaaaacaagcaagtatttctttgccattagcaggtgttggagttgatgttggagttgatccaagtattcaccatctgctgaaggat |
6519829 |
T |
|
| Q |
149 |
taaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgttttaaggtcaaaatgctcctctatcttgtcgtc |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| |||||||||| || | || ||| ||| |
|
|
| T |
6519828 |
taaatgacttgagaattgctttggtgagtccaacatcatcaaaagattctgaaacatagacccatgctttaagttcaaaatgcttctttgtcatgttgtc |
6519729 |
T |
|
| Q |
249 |
attgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattggaacctggttgccactgtcattgcctgcaagtaaa |
348 |
Q |
| |
|
|||||| ||| | | ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
6519728 |
attgtagacatgttgagcaagggtggttttacccattcctcctaaacccactatgctgattattggaacctggttaccactggtattgtctgcaagtaaa |
6519629 |
T |
|
| Q |
349 |
a |
349 |
Q |
| |
|
| |
|
|
| T |
6519628 |
a |
6519628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 26 - 311
Target Start/End: Complemental strand, 6448571 - 6448286
Alignment:
| Q |
26 |
gctcccaacattctgcatccccgttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagtagattcaa |
125 |
Q |
| |
|
||||||||| |||||||| |||||||||||| || ||||||||||| ||||||||||||| ||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
6448571 |
gctcccaacgttctgcattcccgttccagatgtcgtctaaaacaagaaagtatttctttcttgttagtatgtgttgcagttcatgttggagtagattcaa |
6448472 |
T |
|
| Q |
126 |
gtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgttttaaggtca |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||| |||||||| | |||||| ||| |
|
|
| T |
6448471 |
gtcttcaccatctgctgaagaattaaatgactttaggattgctttggtgagtccaacaacatcaaaatattctgaaacatagacccaagatttaagttca |
6448372 |
T |
|
| Q |
226 |
aaatgctcctctatcttgtcgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattat |
311 |
Q |
| |
|
|||||||||| |||| ||| || |||||||||||||||||||| ||||| || |||||||| || | ||| |||||||||||||| |
|
|
| T |
6448371 |
aaatgctcctttatcatgttgtgattgtacacaagcttagcaaaagtggtcttacccatcccacccagacccactatgctgattat |
6448286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 26 - 332
Target Start/End: Complemental strand, 4388726 - 4388420
Alignment:
| Q |
26 |
gctcccaacattctgcatccccgttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagtagattcaa |
125 |
Q |
| |
|
||||||||| ||| ||| ||| ||||||| |||||||||||||||||| |||||||| || ||| |||| || | |||||||||||| ||||| || |
|
|
| T |
4388726 |
gctcccaaccttcctcattcccattccagacatcatctaaaacaagcaaatatttcttaccagttagtttgtgctgcaattgatgttggagcagattaaa |
4388627 |
T |
|
| Q |
126 |
gtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgttttaaggtca |
225 |
Q |
| |
|
|||||| ||| || |||||| | ||||||| | |||||||||||||| ||||||||||||||||||| |||||||||||||||||| | |||||| ||| |
|
|
| T |
4388626 |
ctcttcagcatgtgttgaagagtgaaatgacctcagaattgctttggtaagtccaacaacatcaaaagtttctgaaacgtagacccaagctttaagttca |
4388527 |
T |
|
| Q |
226 |
aaatgctcctctatcttgtcgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattggaacctggttgc |
325 |
Q |
| |
|
|||||||| | ||| || ||||||||||||||||| |||||| ||||| || ||||| || || | ||| ||||||||||||||||| || ||||||| |
|
|
| T |
4388526 |
aaatgctctttcatcctgcggtcattgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacttggttgc |
4388427 |
T |
|
| Q |
326 |
cactgtc |
332 |
Q |
| |
|
| ||||| |
|
|
| T |
4388426 |
cgctgtc |
4388420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 26 - 314
Target Start/End: Original strand, 5298971 - 5299259
Alignment:
| Q |
26 |
gctcccaacattctgcatccccgttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagtagattcaa |
125 |
Q |
| |
|
||||||||||||| ||| |||||||||| |||||| |||||||||| ||||||||||| ||| | || || | ||||||||||||||||||||| |
|
|
| T |
5298971 |
gctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcctgttagtctctgctgcaattgatgttggagtagattcaa |
5299070 |
T |
|
| Q |
126 |
gtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgttttaaggtca |
225 |
Q |
| |
|
||||||||||||||| ||||| | ||||||| | |||||||||||| ||||||||||||| ||||| ||| ||||| |||||||| | ||| || ||| |
|
|
| T |
5299071 |
gtcttcaccatctgccgaagagtgaaatgaccgtaaaattgctttggtaagtccaacaacattaaaagtttccgaaacatagacccaggcttttagttca |
5299170 |
T |
|
| Q |
226 |
aaatgctcctctatcttgtcgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattgg |
314 |
Q |
| |
|
|| || | || |||| ||| || |||||||||||| | ||||||||||||||| ||||| || |||| ||| ||||||||||||||||| |
|
|
| T |
5299171 |
aactgtttctgtatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccactatgctgattattgg |
5299259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 8568744 - 8568374
Alignment:
| Q |
19 |
agtaacagctcccaacattctgcatccccgttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagta |
118 |
Q |
| |
|
|||||| |||||||| |||| ||| ||| |||||||||||||||| ||||||||| | || || || |||| || ||||| |||||| || |||| |
|
|
| T |
8568744 |
agtaactgctcccaaaattcctcattcccattccagatatcatctagaacaagcaaaaactttttgcctgttaatatctgttgtagttgacatttgagtg |
8568645 |
T |
|
| Q |
119 |
gattcaagtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgtttt |
218 |
Q |
| |
|
||| |||||||||||| || | ||| |||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| | |||||| | ||| |
|
|
| T |
8568644 |
gatccaagtcttcaccgtcagatgaggaatgaaatgacctgagaattgttttggtgagtccaacaacatcaaaagattctgaaacatggacccaagcttt |
8568545 |
T |
|
| Q |
219 |
aaggtcaaaatgctcctctatcttgtcgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattggaacc |
318 |
Q |
| |
|
||| ||||| |||| ||||||||||| ||||||||| ||||| |||||||||||| || |||||||| |||| ||| || || || |||| || |
|
|
| T |
8568544 |
aagttcaaattgcttctctatcttgtggtcattgtagacaagtcgagcaagggtggtcttacccatcccacctagacccacaatacttattacgctcaca |
8568445 |
T |
|
| Q |
319 |
tggttgccactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccatatat |
389 |
Q |
| |
|
|||||||||| |||||| || ||| ||| | ||||||| || | ||||||||||||||||||||||| |
|
|
| T |
8568444 |
tggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccatatat |
8568374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 103 - 389
Target Start/End: Original strand, 5250486 - 5250772
Alignment:
| Q |
103 |
agttgatgttggagtagattcaagtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaa |
202 |
Q |
| |
|
||||||| |||||||||||| || |||||| |||||| |||||| | |||||| | | |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5250486 |
agttgatattggagtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaa |
5250585 |
T |
|
| Q |
203 |
cgtagacccatgttttaaggtcaaaatgctcctctatcttgtcgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactat |
302 |
Q |
| |
|
| |||||||| | |||||| ||||||||||||| ||| ||| ||| |||||| |||||| |||||| ||||| || ||||| || || | ||| ||||| |
|
|
| T |
5250586 |
catagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacgcaagctgagcaagagtggtcttacccattccaccgagacccactat |
5250685 |
T |
|
| Q |
303 |
gctgattattggaacctggttgccactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccatatat |
389 |
Q |
| |
|
|||||||||||| || || |||||||||| || | | |||||||| | ||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
5250686 |
gctgattattggtacatgattgccactgtttatgtcagacagtaaaaaatcaattaactcctccttgtcaccatctctaccatatat |
5250772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 26 - 389
Target Start/End: Original strand, 5268296 - 5268659
Alignment:
| Q |
26 |
gctcccaacattctgcatccccgttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagtagattcaa |
125 |
Q |
| |
|
|||||||||||||| || ||| ||||||| |||||| |||| ||||||||||||||| || ||| || || | ||||||||||||| |||||| |
|
|
| T |
5268296 |
gctcccaacattcttcactcccattccagacatcatccaaaaaaagcaagtatttcttgcctgttagtccctgctgcaactgatgttggagtaaattcaa |
5268395 |
T |
|
| Q |
126 |
gtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgttttaaggtca |
225 |
Q |
| |
|
||||||||||||||||||| | | ||||||| | ||||||||||| || ||||| | | |||||||| ||| ||||| |||||||| | |||| | | | |
|
|
| T |
5268396 |
gtcttcaccatctgctgaaaagtcaaatgacctcagaattgctttagtaagtccgagaccatcaaaaatttccgaaacatagacccaggctttatgttta |
5268495 |
T |
|
| Q |
226 |
aaatgctcctctatcttgtcgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattggaacctggttgc |
325 |
Q |
| |
|
|||| ||||| ||| | | |||||||||||| || | |||||||||||| || ||||| || || | ||| ||||||||||||||||| || ||||||| |
|
|
| T |
5268496 |
aaattctccttgatcctttggtcattgtacacgagttgagcaagggtggtcttacccattccaccgagacccactatgctgattattggtacatggttgc |
5268595 |
T |
|
| Q |
326 |
cactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccatatat |
389 |
Q |
| |
|
| |||| || | | |||||||| |||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
5268596 |
ccttgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatat |
5268659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 287
Target Start/End: Original strand, 6900375 - 6900617
Alignment:
| Q |
48 |
gttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagtagattcaagtcttcaccatctgctg---aa |
144 |
Q |
| |
|
||||| || |||||||||||| ||||| |||| ||| ||||||||| | ||||| | ||||||||||||| | ||||||||||| |||||| | || |
|
|
| T |
6900375 |
gttcctgacatcatctaaaacgagcaaatattgcttgcccattaacctctgttgcaactgatgttggagtatttccaagtcttcactatctgccgccgaa |
6900474 |
T |
|
| Q |
145 |
gaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgttttaaggtcaaaatgctcctctatcttgt |
244 |
Q |
| |
|
|||| || |||| | ||||||| || ||| || | ||||| |||||||||||| ||||| | |||||| | ||||| |||||||||||| | ||| ||| |
|
|
| T |
6900475 |
gaatgaattgacctaagaattgattgggtcagacgaacaagatcaaaagattccgaaacatggacccaagctttaatttcaaaatgctccacgatcatgt |
6900574 |
T |
|
| Q |
245 |
cgtcattgtacacaagcttagcaagggtggttttccccatccc |
287 |
Q |
| |
|
|||||| ||| ||||||| || ||||| || || |||||||| |
|
|
| T |
6900575 |
cgtcatagtaaacaagctgggcgagggttgtcttacccatccc |
6900617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 153 - 333
Target Start/End: Complemental strand, 6721725 - 6721545
Alignment:
| Q |
153 |
tgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgttttaaggtcaaaatgctcctctatcttgtcgtcattg |
252 |
Q |
| |
|
|||||||||||||| || || ||| | || |||||||||||||||||||| |||||||| | |||||| ||| | |||||| ||||| ||| ||||||| |
|
|
| T |
6721725 |
tgacttgagaattgtttgggcgagacgaagaacatcaaaagattctgaaagatagacccaagctttaagttcatattgctccactatcctgtggtcattg |
6721626 |
T |
|
| Q |
253 |
tacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattggaacctggttgccactgtca |
333 |
Q |
| |
|
|| ||||||| |||||||| || || || ||||| | ||| ||||| |||||||| || ||||||||| |||||||| |
|
|
| T |
6721625 |
taaacaagctgggcaagggttgtcttacctatcccaatcagacccactatactgattatgggcacctggttgtcactgtca |
6721545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 260
Target Start/End: Original strand, 7750381 - 7750501
Alignment:
| Q |
140 |
ctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgttttaaggtcaaaatgctcctctat |
239 |
Q |
| |
|
||||||||| |||| | |||||||||||| |||||| ||||| |||||||||||||||||| |||||||| | |||||| ||||| ||||| | ||| |
|
|
| T |
7750381 |
ctgaagaatgaaattccctgagaattgcttgggtgagatgaacaagatcaaaagattctgaaacatagacccaagctttaagttcaaattgctcatgtat |
7750480 |
T |
|
| Q |
240 |
cttgtcgtcattgtacacaag |
260 |
Q |
| |
|
||||| ||| ||||| ||||| |
|
|
| T |
7750481 |
cttgtggtcgttgtaaacaag |
7750501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 287
Target Start/End: Complemental strand, 6591119 - 6590856
Alignment:
| Q |
27 |
ctcccaacattctgcatccccgttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagtagattcaag |
126 |
Q |
| |
|
|||||||||||| || | ||| | ||||||| ||||||||||||||||||||||| || ||| || ||||| | |||| ||||||||| | ||| |
|
|
| T |
6591119 |
ctcccaacattccgcttttccgctacagatattgtctaaaacaagcaagtatttcttgccagttactatctgttgtaattgacgttggagtatttctaag |
6591020 |
T |
|
| Q |
127 |
tcttcaccat---ctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgttttaaggt |
223 |
Q |
| |
|
||||||| || ||||||| ||| |||| | ||||||||| | |||||| ||||| ||||||||||| |||||| |||||||| | |||||| | |
|
|
| T |
6591019 |
tcttcactataagctgctgataaatgaaattgcctgagaattgatcgggtgagatgaacaagatcaaaagattttgaaacatagacccaagctttaagtt |
6590920 |
T |
|
| Q |
224 |
caaaatgctcctctatcttgtcgtcattgtacacaagcttagcaagggtggttttccccatccc |
287 |
Q |
| |
|
|||| |||||| |||||||| ||| ||||| |||||| |||||||| || || |||||||| |
|
|
| T |
6590919 |
caaattgctccagtatcttgtggtccttgtaaacaagccgggcaagggttgtcttacccatccc |
6590856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 310
Target Start/End: Original strand, 5281065 - 5281208
Alignment:
| Q |
167 |
ctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgttttaaggtcaaaatgctcctctatcttgtcgtcattgtacacaagcttagc |
266 |
Q |
| |
|
||||||| | || |||| |||||||| |||||||||| |||||||| | |||| | ||||||||||| | || | ||||| || |||||||||| ||| |
|
|
| T |
5281065 |
ctttggtaattcgaacagcatcaaaaaattctgaaacatagacccaagctttatgttcaaaatgctctttaattctatcgtcgttatacacaagctcagc |
5281164 |
T |
|
| Q |
267 |
aagggtggttttccccatccctcctaaaccgactatgctgatta |
310 |
Q |
| |
|
||||||||| || |||||||| || |||| |||||| |||||| |
|
|
| T |
5281165 |
aagggtggtcttacccatcccaccagaacccactatggtgatta |
5281208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 308
Target Start/End: Original strand, 8471824 - 8472083
Alignment:
| Q |
49 |
ttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagtagattcaagtcttcaccatctgctgaagaat |
148 |
Q |
| |
|
||||||| |||||| | |||||| | || ||||| |||||||| || | ||| ||||| ||||||||| || ||||||||||| || ||| ||||||| |
|
|
| T |
8471824 |
ttccagacatcatccacaacaagtagatagttcttgcccattaatatttcttgcagttgccgttggagtatatccaagtcttcactatttgcagaagaat |
8471923 |
T |
|
| Q |
149 |
taaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgttttaaggtcaaaatgctcctctatcttgtcgtc |
248 |
Q |
| |
|
|||| | |||||| |||||| ||| ||| |||||||||| | || || || | |||||| |||||| ||||| |||| || ||| | | ||| |
|
|
| T |
8471924 |
caaattttctaagaattattttggtaagtgcaataacatcaaaatactcagatacatggacccaaactttaagttcaaactgcttgtccatcctctggtc |
8472023 |
T |
|
| Q |
249 |
attgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgat |
308 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
8472024 |
attgtagacaagctgagcaagggtggtcttccccatcccaggcaaacccactatgctgat |
8472083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 6917490 - 6917574
Alignment:
| Q |
150 |
aaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgttttaaggtcaaaatgctcc |
234 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||| |||||||||||||||| | | |||||| | |||||| || | ||||||| |
|
|
| T |
6917490 |
aaatgacctgagaattgatttggtgagaccaacaagatcaaaagattctgaatcatggacccaagctttaagttccacatgctcc |
6917574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 6838469 - 6838408
Alignment:
| Q |
247 |
tcattgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgat |
308 |
Q |
| |
|
|||||||| ||||||| |||||||||||| || |||||||| || ||||| ||||||||||| |
|
|
| T |
6838469 |
tcattgtagacaagctgagcaagggtggtctttcccatcccacccaaaccaactatgctgat |
6838408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 13270215 - 13270132
Alignment:
| Q |
188 |
caaaagattctgaaacgtagacccatgttttaaggtcaaaatgctcctctatcttgtcgtcattgtacacaagcttagcaaggg |
271 |
Q |
| |
|
|||||||||||| ||| |||||||| | ||||| ||||| ||||||| |||| | | ||||||||| ||||||| |||||||| |
|
|
| T |
13270215 |
caaaagattctggaacatagacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgagcaaggg |
13270132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 26 - 389
Target Start/End: Complemental strand, 7266 - 6903
Alignment:
| Q |
26 |
gctcccaacattctgcatccccgttccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagtagattcaa |
125 |
Q |
| |
|
|||||||| ||||| || ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7266 |
gctcccaatattctacactcccattccatatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagttgattcaa |
7167 |
T |
|
| Q |
126 |
gtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccatgttttaaggtca |
225 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||| |||||| ||| |
|
|
| T |
7166 |
gtcttcaccatctgctgaaggattaaatgacttgagaattgctttggtgagtccaaaaacatcgaaagattctgaaacatagacccatgctttaagttca |
7067 |
T |
|
| Q |
226 |
aaatgctcctctatcttgtcgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattggaacctggttgc |
325 |
Q |
| |
|
||||||| || |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7066 |
aaatgcttctttatcttgttgtctttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgattattggaacctggttgc |
6967 |
T |
|
| Q |
326 |
cactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccatatat |
389 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || ||||||||| |||| ||||||||||| |
|
|
| T |
6966 |
cactgtcattgccttcaagtaaaaacttgattattttttccttatcaacatccctaccatatat |
6903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 114 - 313
Target Start/End: Complemental strand, 6572999 - 6572800
Alignment:
| Q |
114 |
gagtagattcaagtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaacgtagacccat |
213 |
Q |
| |
|
|||| ||| |||||||||||| ||||| |||||| |||||| | ||||||| |||||||||||||||| ||||||| |||| ||| || | |||||| |
|
|
| T |
6572999 |
gagtggatccaagtcttcaccgtctgcaaaagaatggaatgacctaagaattgttttggtgagtccaacagcatcaaatgattttgagacatggacccaa |
6572900 |
T |
|
| Q |
214 |
gttttaaggtcaaaatgctcctctatcttgtcgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattg |
313 |
Q |
| |
|
| |||||||||||| || | ||| ||| | | ||||||||| ||||||| |||||||||||| ||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
6572899 |
gctttaaggtcaaactgtttctccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatcccacccaaacccactatgctgattattg |
6572800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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