View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15316_low_4 (Length: 380)
Name: NF15316_low_4
Description: NF15316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15316_low_4 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 6947850 - 6948195
Alignment:
| Q |
1 |
ttatcatcatctctaccatatattgttgactcatccatgagagctgtagatgacaatctttttgaaggtttccaactgactaagccttcattactagcgc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6947850 |
ttatcatcatctctaccatatatggttgactcatccatgagagctgtagatgacaatctttttgaaggtttccaactgactaagccttcattactagcgc |
6947949 |
T |
|
| Q |
101 |
aaggactttctcccaatcccaactctttctttttctttgcaagaagttctagtttatcgagctgttcattgagcctacattcaaatggatttgtagttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6947950 |
aaggactttctcccaatcccaactctttctttttctttgcaagaagttctagtttatcgagctgttcattgagcctacattcaaatggatttgtagttaa |
6948049 |
T |
|
| Q |
201 |
agctgaaaccaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6948050 |
agctgaaaccaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtct |
6948149 |
T |
|
| Q |
301 |
gcctcatagacagcatgtttaagttcatcaagccacttcttcacat |
346 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6948150 |
gcctcatagacaacatgtttaagttcatcaagccacttcttcacat |
6948195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 6736571 - 6736945
Alignment:
| Q |
1 |
ttatcatcatctctaccatatattgttgactcatccatgagagctgtagatgacaatctttttgaaggtttccaactgactaagccttcattactagcgc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6736571 |
ttatcatcatctctaccatatatgcttgactcatccaggagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattactagcac |
6736670 |
T |
|
| Q |
101 |
aaggactttctcccaatcccaactctttctttttctttgcaagaagttctagtttatcgagctgttcattgagcctacattcaaatggatttgtagttaa |
200 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6736671 |
taggaccttctcccaatctcaaatctttcttttgctttgcaagaagttctagtttatcgagctgttcattgagcctacattcaaatggatttgtagttaa |
6736770 |
T |
|
| Q |
201 |
agctgaaaccaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
6736771 |
agctgaaaccaagcccaataaattggtggtaagtggttcagattcagctttcaccttatttagcattgcatcagtagaaatctcatccaatagttggtct |
6736870 |
T |
|
| Q |
301 |
gcctcatagacagcatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct |
375 |
Q |
| |
|
|| ||||| | | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
6736871 |
gcttcataaagaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct |
6736945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 6553886 - 6553512
Alignment:
| Q |
1 |
ttatcatcatctctaccatatattgttgactcatccatgagagctgtagatgacaatctttttgaaggtttccaactgactaagccttcattactagcgc |
100 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6553886 |
ttatcaacatccctaccatatatgcttgactcatccacgagagctgtagacgacaacctttttgaaggtttccaactgactaagccttcattactagcac |
6553787 |
T |
|
| Q |
101 |
aaggactttctcccaatcccaactctttctttttctttgcaagaagttctagtttatcgagctgttcattgagcctacattcaaatggatttgtagttaa |
200 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6553786 |
taggaccttctcccaatctcaaatctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctacattcaaatggatttgtagttaa |
6553687 |
T |
|
| Q |
201 |
agctgaaaccaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtct |
300 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6553686 |
agctgaaacgaaacccaataaattggtggtaagtggttcagattcagctttttgcttatttatcattgcatcagtagaaatctcatctaatagttggtct |
6553587 |
T |
|
| Q |
301 |
gcctcatagacagcatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct |
375 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
6553586 |
gcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct |
6553512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 8455235 - 8455609
Alignment:
| Q |
1 |
ttatcatcatctctaccatatattgttgactcatccatgagagctgtagatgacaatctttttgaaggtttccaactgactaagccttcattactagcgc |
100 |
Q |
| |
|
|||||| |||||| ||||||||| | |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
8455235 |
ttatcaacatctcgaccatatatgctcgactcatccacgagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattcctagcac |
8455334 |
T |
|
| Q |
101 |
aaggactttctcccaatcccaactctttctttttctttgcaagaagttctagtttatcgagctgttcattgagcctacattcaaatggatttgtagttaa |
200 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||||| ||| ||| |
|
|
| T |
8455335 |
aaggaccttctcccaatctcaactctttccttttctttgcaagaaattctagtttatccagttgttcattgagcctagattcaaatggatttctagataa |
8455434 |
T |
|
| Q |
201 |
agctgaaaccaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8455435 |
agctgaaaccaagcccaataaattggtggtaagtggttcagattctgctttcaggttatttagcattgcatcagtagaaatctcatctaatagttggtct |
8455534 |
T |
|
| Q |
301 |
gcctcatagacagcatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct |
375 |
Q |
| |
|
|| ||||| ||| |||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
8455535 |
gcttcataaacaacatgtttaagatcatcaagccacttcttcacatatttgttttggtactgctttatctctgct |
8455609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 8590310 - 8590684
Alignment:
| Q |
1 |
ttatcatcatctctaccatatattgttgactcatccatgagagctgtagatgacaatctttttgaaggtttccaactgactaagccttcattactagcgc |
100 |
Q |
| |
|
|||||| |||||||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
8590310 |
ttatcaacatctctaccatatatgctcgactcatccacaagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcgttactagcac |
8590409 |
T |
|
| Q |
101 |
aaggactttctcccaatcccaactctttctttttctttgcaagaagttctagtttatcgagctgttcattgagcctacattcaaatggatttgtagttaa |
200 |
Q |
| |
|
| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8590410 |
agggaccttctcccaatcccaactttttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctggtttcaaatggatttgtagttaa |
8590509 |
T |
|
| Q |
201 |
agctgaaaccaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtct |
300 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8590510 |
agctgaaaccaagcccaataaattgctgctaagtggttcagatttagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtct |
8590609 |
T |
|
| Q |
301 |
gcctcatagacagcatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct |
375 |
Q |
| |
|
|| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
8590610 |
gcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgcttcggtactgctttatctctgct |
8590684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 375
Target Start/End: Complemental strand, 6479423 - 6479056
Alignment:
| Q |
8 |
catctctaccatatattgttgactcatccatgagagctgtagatgacaatctttttgaaggtttccaactgactaagccttcattactagcgcaaggact |
107 |
Q |
| |
|
||||||| |||||||| | |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
6479423 |
catctctgccatatatgctggactcatccacgagagccgtagatgacaatctttttgaaggtttccaactgactaagccttcattactagcactgggacc |
6479324 |
T |
|
| Q |
108 |
ttctcccaatcccaactctttctttttctttgcaagaagttctagtttatcgagctgttcattgagcctacattcaaatggatttgtagttaaagctgaa |
207 |
Q |
| |
|
|||| ||||||||||| | | ||||| | ||||||||| |||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6479323 |
ttctgccaatcccaacacctacttttgcattgcaagaaattctagtttatccagttgttcattgagcctagattcaaatggatttgtagttaaagctgaa |
6479224 |
T |
|
| Q |
208 |
accaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtctgcctcat |
307 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
6479223 |
accacgcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagatatctcatctaatagttggtctgcttcat |
6479124 |
T |
|
| Q |
308 |
agacagcatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct |
375 |
Q |
| |
|
| ||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6479123 |
aaacaacatgtttaagtttatcaagccacttcttcacatatatgatttggtactgctttatctctgct |
6479056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 375
Target Start/End: Complemental strand, 6519603 - 6519236
Alignment:
| Q |
8 |
catctctaccatatattgttgactcatccatgagagctgtagatgacaatctttttgaaggtttccaactgactaagccttcattactagcgcaaggact |
107 |
Q |
| |
|
||||||||||| ||| |||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6519603 |
catctctaccacataagcttgactcatccacaagagatgtagatgacaatcgttttgaaggtttccaactgactaagccttcattactagcacaaggacc |
6519504 |
T |
|
| Q |
108 |
ttctcccaatcccaactctttctttttctttgcaagaagttctagtttatcgagctgttcattgagcctacattcaaatggatttgtagttaaagctgaa |
207 |
Q |
| |
|
|| ||||||||| | |||| ||| | ||||||| ||||||| | || || ||| |||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
6519503 |
aacttccaatcccagccttttcgtttgttgtgcaagagattctagtgtctccagtagtttattgagcctagattcaaatggatttccagttaaagctgaa |
6519404 |
T |
|
| Q |
208 |
accaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtctgcctcat |
307 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
6519403 |
acccagccaaataaattggtggtaagtggttcagattcagctttcaacttatatatcattgcatcagtagaaatctcatctaatagttggtctgcttcat |
6519304 |
T |
|
| Q |
308 |
agacagcatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct |
375 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| | ||||||| |
|
|
| T |
6519303 |
aaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttcagctctgct |
6519236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 235 - 363
Target Start/End: Original strand, 5281466 - 5281594
Alignment:
| Q |
235 |
ggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtctgcctcatagacagcatgtttaagttcatcaagcc |
334 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||| ||||||| ||||||||| || | ||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
5281466 |
ggttcagattcatctttcagcttattcagttgtgcgtcagtagcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagcc |
5281565 |
T |
|
| Q |
335 |
acttcttcacatatatgctttggtactgc |
363 |
Q |
| |
|
||||||| |||||| |||||| ||||||| |
|
|
| T |
5281566 |
acttctttacatatgtgcttttgtactgc |
5281594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 371
Target Start/End: Original strand, 5250981 - 5251117
Alignment:
| Q |
235 |
ggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtctgcctcatagacagcatgtttaagttcatcaagcc |
334 |
Q |
| |
|
|||| |||||||||||||||||| || || ||||||||| | ||||||||||||||| ||||| ||||||| || ||||||||| |||||||||| |
|
|
| T |
5250981 |
ggttgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagcc |
5251080 |
T |
|
| Q |
335 |
acttcttcacatatatgctttggtactgctttatctc |
371 |
Q |
| |
|
|||||||||| || ||||||||||| ||||| ||||| |
|
|
| T |
5251081 |
acttcttcacgtacatgctttggtattgcttcatctc |
5251117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 267 - 371
Target Start/End: Complemental strand, 4388128 - 4388024
Alignment:
| Q |
267 |
tgcatcagtagaaatctcatctaacagttggtctgcctcatagacagcatgtttaagttcatcaagccacttcttcacatatatgctttggtactgcttt |
366 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||| ||||||| || ||||||||| |||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
4388128 |
tgcatcagttgcaatctcatctaacagctggtcaacctcatatgcattatgtttaagatcatcaagccacttcttcacggacatgctttggtactgcttc |
4388029 |
T |
|
| Q |
367 |
atctc |
371 |
Q |
| |
|
||||| |
|
|
| T |
4388028 |
atctc |
4388024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 371
Target Start/End: Original strand, 5268903 - 5269004
Alignment:
| Q |
270 |
atcagtagaaatctcatctaacagttggtctgcctcatagacagcatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatc |
369 |
Q |
| |
|
|||||| | ||||||||||||||| ||||| ||||||| || ||||||||| |||||||||||||||||||| || ||||||||| ||||||| ||| |
|
|
| T |
5268903 |
atcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgctttggaactgcttcatc |
5269002 |
T |
|
| Q |
370 |
tc |
371 |
Q |
| |
|
|| |
|
|
| T |
5269003 |
tc |
5269004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 371
Target Start/End: Original strand, 5299587 - 5299679
Alignment:
| Q |
279 |
aatctcatctaacagttggtctgcctcatagacagcatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctc |
371 |
Q |
| |
|
||||||||| || ||||| ||||| ||||| ||| |||||||||| ||| |||||||||||||||| ||| ||||||||| |||||| |||| |
|
|
| T |
5299587 |
aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctc |
5299679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 342
Target Start/End: Complemental strand, 8480045 - 8479979
Alignment:
| Q |
276 |
agaaatctcatctaacagttggtctgcctcatagacagcatgtttaagttcatcaagccacttcttc |
342 |
Q |
| |
|
||||||||||| ||| ||||||| ||| ||||| ||| ||||||||||||||||||| || |||||| |
|
|
| T |
8480045 |
agaaatctcatgtaatagttggtttgcttcataaacaacatgtttaagttcatcaagtcaattcttc |
8479979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 374
Target Start/End: Original strand, 6917935 - 6918038
Alignment:
| Q |
271 |
tcagtagaaatctcatctaacagttggtctgcctcatagacagcatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatct |
370 |
Q |
| |
|
|||||||||||| |||||| ||||||||| | ||||| || | ||||| || ||||||||||| |||||||| | | | ||||||||||||||| || |
|
|
| T |
6917935 |
tcagtagaaatcacatctagaagttggtctacttcatatacctcgtgtttgagatcatcaagccaattcttcacgtctcggttttggtactgctttacct |
6918034 |
T |
|
| Q |
371 |
ctgc |
374 |
Q |
| |
|
|||| |
|
|
| T |
6918035 |
ctgc |
6918038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 8480151 - 8480100
Alignment:
| Q |
77 |
tgactaagccttcattactagcgcaaggactttctcccaatcccaactcttt |
128 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
8480151 |
tgactaagccttcattgttagcgttaggaccttctcccaatcccaactcttt |
8480100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 8480089 - 8480061
Alignment:
| Q |
197 |
ttaaagctgaaaccaagcccaataaattg |
225 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8480089 |
ttaaagctgaaaccaagcccaataaattg |
8480061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 8568119 - 8568067
Alignment:
| Q |
314 |
catgtttaagttcatcaagccacttcttcacatatatgctttggtactgcttt |
366 |
Q |
| |
|
||||||| |||| || |||||| |||||||||||| || |||||||||||||| |
|
|
| T |
8568119 |
catgttttagtttatgaagccagttcttcacatatgtgttttggtactgcttt |
8568067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 6925 - 6551
Alignment:
| Q |
1 |
ttatcatcatctctaccatatattgttgactcatccatgagagctgtagatgacaatctttttgaaggtttccaactgactaagccttcattactagcgc |
100 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6925 |
ttatcaacatccctaccatatatgcttgactcatccacgagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattactagcac |
6826 |
T |
|
| Q |
101 |
aaggactttctcccaatcccaactctttctttttctttgcaagaagttctagtttatcgagctgttcattgagcctacattcaaatggatttgtagttaa |
200 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6825 |
taggaccttctcccaatctcaaatctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctacattcaaatggatttgtagttaa |
6726 |
T |
|
| Q |
201 |
agctgaaaccaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtct |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6725 |
agctgaaaccaaacccaataaattggtggtaagtggttcagattcagctttttgcttatttatcattgcatcagtagaaatctcatctaatagttggtct |
6626 |
T |
|
| Q |
301 |
gcctcatagacagcatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct |
375 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
6625 |
gcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct |
6551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 41068617 - 41068553
Alignment:
| Q |
77 |
tgactaagccttcattactagcgcaaggactttctcccaatcccaactctttctttttctttgca |
141 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
41068617 |
tgactaagccttcattactagcgttaggaccttctcccaatcccaactctttcttttgctttgca |
41068553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 41068464 - 41068403
Alignment:
| Q |
314 |
catgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct |
375 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| | || ||||||| |
|
|
| T |
41068464 |
catgtttaagttcatcaagccaattcttcacatatatgctttggtactgttatagctctgct |
41068403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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