View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15316_low_6 (Length: 320)

Name: NF15316_low_6
Description: NF15316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15316_low_6
NF15316_low_6
[»] chr3 (3 HSPs)
chr3 (113-307)||(32979413-32979609)
chr3 (229-307)||(11219892-11219974)
chr3 (261-299)||(42633168-42633206)
[»] chr4 (1 HSPs)
chr4 (172-307)||(44303074-44303210)
[»] chr2 (4 HSPs)
chr2 (229-307)||(6707722-6707806)
chr2 (231-307)||(12853359-12853441)
chr2 (261-307)||(23178174-23178220)
chr2 (261-307)||(23589431-23589477)
[»] chr1 (3 HSPs)
chr1 (229-307)||(26055694-26055778)
chr1 (261-299)||(25786767-25786805)
chr1 (261-300)||(1616503-1616542)
[»] scaffold1974 (1 HSPs)
scaffold1974 (229-307)||(199-282)
[»] scaffold1878 (1 HSPs)
scaffold1878 (229-307)||(992-1075)
[»] scaffold0290 (1 HSPs)
scaffold0290 (229-307)||(9111-9194)
[»] chr6 (1 HSPs)
chr6 (231-307)||(34083794-34083876)
[»] scaffold0051 (1 HSPs)
scaffold0051 (231-310)||(39463-39548)
[»] scaffold0007 (1 HSPs)
scaffold0007 (261-299)||(145491-145529)
[»] chr8 (1 HSPs)
chr8 (261-299)||(38590612-38590650)


Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 113 - 307
Target Start/End: Original strand, 32979413 - 32979609
Alignment:
Q  113 acaatcctacccagaaagaagnnnnnnntcaatagcacaaattaaaacacataaaccagaattaaaacacataaaccttcaaata-aattaaacccatan 211  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||     
T  32979413 acaatcctacccagaaagaagaaaaaa-tcaatagcacaaattaaaacacataaactagaattaaaacacataaaccttcaaatagaattaaacccatat 32979511  T
Q  212 nnnnnnn--ctnnnnnnnnccagaaatcatcatcattagcagcaacaacacaaatcaaattcaacccattttaattcttttcatcatcatcttcatga 307  Q
             ||        |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32979512 tttttttttcttaaaaaaaccagaaatcatcatcattagcatcaacaacacaaatcaaattcaacccattttaattcttttcatcatcatcttcatga 32979609  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 11219892 - 11219974
Alignment:
Q  229 ccagaaatcatcatcattagcagcaacaacac----aaatcaaattcaacccattttaattcttttcatcatcatcttcatga 307  Q
    |||||||||||||||  ||||||||||||||     |||||||||||||||  |||| |||||||||||||||||| ||||||    
T  11219892 ccagaaatcatcatctatagcagcaacaacatcaagaaatcaaattcaaccatttttgattcttttcatcatcatcatcatga 11219974  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 42633168 - 42633206
Alignment:
Q  261 aaatcaaattcaacccattttaattcttttcatcatcat 299  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  42633168 aaatcatattcaacccattttaattcttttcatcatcat 42633206  T

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Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 172 - 307
Target Start/End: Original strand, 44303074 - 44303210
Alignment:
Q  172 aattaaaacacataaaccttcaaata-aattaaacccatannnnnnnnctnnnnnnnnccagaaatcatcatcattagcagcaacaacacaaatcaaatt 270  Q
    |||||||||||||||||||||||||| |||||||||||||        ||        ||||||||||||||||||||||||||||||||||||||||||    
T  44303074 aattaaaacacataaaccttcaaatagaattaaacccatattttttttctaaaaaaaaccagaaatcatcatcattagcagcaacaacacaaatcaaatt 44303173  T
Q  271 caacccattttaattcttttcatcatcatcttcatga 307  Q
    |||||||||||||||||||||||||||||||||||||    
T  44303174 caacccattttaattcttttcatcatcatcttcatga 44303210  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 6707806 - 6707722
Alignment:
Q  229 ccagaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatga 307  Q
    |||||||||||||||| ||||||||||||||||      ||||||||||||||| |||| |||||||||||||||||| ||||||    
T  6707806 ccagaaatcatcatcaatagcagcaacaacacatcaaaaaatcaaattcaacccttttttattcttttcatcatcatcatcatga 6707722  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 307
Target Start/End: Original strand, 12853359 - 12853441
Alignment:
Q  231 agaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatga 307  Q
    |||||||||||||| || |||||||||||||      ||||||||||||||  ||||||||||||||||||||||| ||||||    
T  12853359 agaaatcatcatcaatatcagcaacaacacatcaagaaatcaaattcaaccttttttaattcttttcatcatcatcatcatga 12853441  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 23178174 - 23178220
Alignment:
Q  261 aaatcaaattcaacccattttaattcttttcatcatcatcttcatga 307  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||||    
T  23178174 aaatcaaattcaaccctttttgattcttttcatcatcatcatcatga 23178220  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 23589431 - 23589477
Alignment:
Q  261 aaatcaaattcaacccattttaattcttttcatcatcatcttcatga 307  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||||    
T  23589431 aaatcaaattcaaccctttttgattcttttcatcatcatcatcatga 23589477  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 26055778 - 26055694
Alignment:
Q  229 ccagaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatga 307  Q
    |||||||||||||||| ||||||||||||||||      ||||||||||||||| |||| |||||||||||||||||| ||||||    
T  26055778 ccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccctttttgattcttttcatcatcatcatcatga 26055694  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 25786805 - 25786767
Alignment:
Q  261 aaatcaaattcaacccattttaattcttttcatcatcat 299  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  25786805 aaatcatattcaacccattttaattcttttcatcatcat 25786767  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 1616503 - 1616542
Alignment:
Q  261 aaatcaaattcaacccattttaattcttttcatcatcatc 300  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  1616503 aaatcaaattcaacccttttgaattcttttcatcatcatc 1616542  T

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Target: scaffold1974 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 282 - 199
Alignment:
Q  229 ccagaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatga 307  Q
    |||||||||||||||| ||| ||||||||||||      ||||||||||||||| ||||||||||||||||||||||| ||||||    
T  282 ccagaaatcatcatcaatag-agcaacaacacatcaagaaatcaaattcaaccctttttaattcttttcatcatcatcatcatga 199  T

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Target: scaffold1878 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 992 - 1075
Alignment:
Q  229 ccagaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatga 307  Q
    |||||||||||||||| ||| ||||||||||||      ||||||||||||||| ||||||||||||||||||||||| ||||||    
T  992 ccagaaatcatcatcaatag-agcaacaacacatcaagaaatcaaattcaaccctttttaattcttttcatcatcatcatcatga 1075  T

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Target: scaffold0290 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 9194 - 9111
Alignment:
Q  229 ccagaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatga 307  Q
    |||||||||||||||| ||| ||||||||||||      ||||||||||||||| ||||||||||||||||||||||| ||||||    
T  9194 ccagaaatcatcatcaatag-agcaacaacacatcaagaaatcaaattcaaccctttttaattcttttcatcatcatcatcatga 9111  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 34083876 - 34083794
Alignment:
Q  231 agaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatga 307  Q
    |||||| ||||||| ||||||||||||||||      ||||||||||||||| |||| |||||||||||||||||| ||||||    
T  34083876 agaaattatcatcaatagcagcaacaacacatcaagaaatcaaattcaacccttttttattcttttcatcatcatcatcatga 34083794  T

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Target: scaffold0051 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 39548 - 39463
Alignment:
Q  231 agaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgatga 310  Q
    |||||||||||||| ||||||||||||||||      ||||||| ||||||| |||| |||||||||||||||||| |||| ||||    
T  39548 agaaatcatcatcaatagcagcaacaacacatcaagaaatcaaagtcaacccttttttattcttttcatcatcatcatcatcatga 39463  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 145529 - 145491
Alignment:
Q  261 aaatcaaattcaacccattttaattcttttcatcatcat 299  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  145529 aaatcatattcaacccattttaattcttttcatcatcat 145491  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 38590650 - 38590612
Alignment:
Q  261 aaatcaaattcaacccattttaattcttttcatcatcat 299  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  38590650 aaatcatattcaacccattttaattcttttcatcatcat 38590612  T

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