View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_high_14 (Length: 407)
Name: NF15317_high_14
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 387
Target Start/End: Original strand, 45177512 - 45177892
Alignment:
| Q |
14 |
attatactgtatggttactactgtgtaaatttataatagnnnnnnnnnactatttatggattcaactgtatggnnnnnnncctactacaaaataacaa-- |
111 |
Q |
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| T |
45177512 |
attatactgtatggttactactgtgtaaatttataatagttttttttt-ctatttatggattcaactgtatggtttttttcctactacaaaataacaatt |
45177610 |
T |
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| Q |
112 |
-----caccattcatgttatgttaatgaaatggtccagctcgagtgnnnnnnnnnnnnnnnt-ttaagagtttgaaacacaatgataattcatcttcttg |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
45177611 |
aacaacaccattcatgttatgttaatgaaatggtccagctcgagtgaaaaatcaaacaaattgttaagagtttgaaacacaatgataattcatcttcttg |
45177710 |
T |
|
| Q |
206 |
tgagtattaagttactccatgtagtaattagttttttctgattattaattccttcttatctaaagttcacagctaggcaatttctttcaagatcgcatca |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45177711 |
tgagtattaagttactccatgtagtaattagttttttctgattattaattccttcttatctaaagttcacaactaggcaatttctttcaagatcgcatca |
45177810 |
T |
|
| Q |
306 |
acaatgtcatttatgtatgcaaatttactacgtgacacgagaaagtagattctttaactttgaaaattgaagagtttattct |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45177811 |
acaatgtcatttatgtatgcaaatttactacgtgacacgagaaagtagattttttaactttgaaaattgaagagtttattct |
45177892 |
T |
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