View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15317_high_2 (Length: 712)
Name: NF15317_high_2
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_high_2 |
 |  |
|
| [»] scaffold0088 (1 HSPs) |
 |  |  |
|
| [»] scaffold0329 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: scaffold0088 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 24 - 701
Target Start/End: Complemental strand, 52304 - 51638
Alignment:
| Q |
24 |
acattgaacgtaatctttggtgtgacaaatgaccaagcctaaagtaccacaaagcattagcaggattaattttcctagatttacatgaaagaggtaaaat |
123 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
52304 |
acattgaacgtaatctttggtgtgataaatgaccaagcctaaagtgccccaaagcattagcaggaattattttcctagatttacatgaaagaggaaaaat |
52205 |
T |
 |
| Q |
124 |
tgcattacaagatttattgagaaaactaaaagacacagaatttgaagaacatgaagatggaaagtatttgtataagccatccagttgcttaaccaaacca |
223 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||||| |||||||| |
|
|
| T |
52204 |
tgcattgcaagatttattgagaatactaaaagacacaaaatttgaagaacatgaagatggaaaatatttctataagccatccggttgcttagccaaacca |
52105 |
T |
 |
| Q |
224 |
atcatcttcaaagacattttgtcctatataagaaaatgatcaagagaaaattgtaaagaacaaaataatgactgacacaacttagcaactgaaatgagac |
323 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
52104 |
atcatcttcaaagacattttgtcctttataagaaaatgatcaagagaaaattgtaaagaacaaaataaggactgacacagcttagcaactgaaatgagat |
52005 |
T |
 |
| Q |
324 |
gaagagtaaaagttggtgaataaagaacatggctaagataaaaatgtgaagtaaaatagatagtgccaccataatgaaccaaaattgaatttccattaga |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52004 |
gaagagtaaaagttggtgaataaagaacatggctgagataaatatgtgaagtaaaagagatagtgccaccataatgaaccaaaattgaatttctattaga |
51905 |
T |
 |
| Q |
424 |
taaagaaacgtgacccaatttaattaattctataaaagaaactataacaagatagattgcaacaaacatgttcattacctcctggatcaaggagtaaaac |
523 |
Q |
| |
|
||||||||| ||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51904 |
taaagaaacatgaaccagt----ttaattctataaaagaaactataacaagatagattgcaacaaacatgttcattagctcctggatcaaggagtaaaac |
51809 |
T |
 |
| Q |
524 |
ttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaaatgtagaagcttcacaa |
623 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51808 |
ttgtgttttgacaattgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaaacgtagaagcttcacaa |
51709 |
T |
 |
| Q |
624 |
cgaaatgtatcatgtatgaatgcaaactcagctaggaaaaggtctgtgtgaagctaattcttcccaaagtgtcttcat |
701 |
Q |
| |
|
|||| ||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51708 |
cgaa--gta-----tatgaatgcaaacacagctaggaataggtctgtgtgaagctaattcttcccaaagtgtcttcat |
51638 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 37 - 432
Target Start/End: Complemental strand, 29499269 - 29498877
Alignment:
| Q |
37 |
tctttggtgtgacaaatgaccaagcctaaagtaccacaaagcattagcaggattaattttcctagatttacatgaaagaggtaaaattgcattacaagat |
136 |
Q |
| |
|
||||||||| || ||||||||||| ||||||| |||||| ||||||| ||| || | || ||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
29499269 |
tctttggtgagataaatgaccaagtctaaagtgccacaaggcattagatggaatactattgctagaattacatgaacgaggtaaaacaacattacaagat |
29499170 |
T |
 |
| Q |
137 |
ttattgagaaaactaaaagacacagaatttgaagaacatgaagatggaaagtatttgtataagccatccagttgcttaaccaaaccaatcatcttcaaag |
236 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| |||| |
|
|
| T |
29499169 |
ttattggaaaaactaaaagacatagaatttgaagtacatgaagatggaatgtatttgtataagtcatccagttgcttagccaaaccaatcatcttaaaag |
29499070 |
T |
 |
| Q |
237 |
acattttgtcctatataagaaaatgatcaagagaaaattgtaaagaacaaaataatgactgacacaacttagcaactgaaatgagacgaagagtaaaagt |
336 |
Q |
| |
|
| | |||||| ||| | |||||||||||| ||| ||||||||| | |||| |||| |||||||||||||| ||||||| | ||||||||| || |
|
|
| T |
29499069 |
atagcgtgtcctgtatgatgcaatgatcaagagtaaagtgtaaagaataggataaagact--cacaacttagcaacagaaatgatattaagagtaaatgt |
29498972 |
T |
 |
| Q |
337 |
tggtgaataaagaacatggctaagataaaaatgtgaagtaaaatagatagtgccaccataatgaaccaaaattgaatttccattagataaagaaac |
432 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||||||||| | | | ||| |||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
29498971 |
tggtgaataaagaacatgactgagataaaaattggaagtaaaagaagcaataccagcataat-aaccaaaatggaatttccattaggtaaagaaac |
29498877 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 542 - 701
Target Start/End: Complemental strand, 29498245 - 29498093
Alignment:
| Q |
542 |
aaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaaatgtagaagcttcacaacgaaatgtatcatgtatg |
641 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| |||| | ||||||||||||||||| ||||| || |
|
|
| T |
29498245 |
aaactgatcattgagacctgtaagaaactgcatgatctagtcgtcattcctatgagttttagcaactctagaagcttcacaacga-------catgtgtg |
29498153 |
T |
 |
| Q |
642 |
aatgcaaactcagctaggaaaaggtctgtgtgaagctaattcttcccaaagtgtcttcat |
701 |
Q |
| |
|
||| || || ||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29498152 |
aatccatgaacaactaggaatgggtctgtgtgaagctaattcttcccaaagtgccttcat |
29498093 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 125 - 402
Target Start/End: Complemental strand, 12285035 - 12284758
Alignment:
| Q |
125 |
gcattacaagatttattgagaaaactaaaagacacagaatttgaagaacatgaagatggaaagtatttgtataagccatccagttgcttaaccaaaccaa |
224 |
Q |
| |
|
|||||||||||||||||| || |||| | | |||||||||||||| || ||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12285035 |
gcattacaagatttattggaaacactactaaaaacagaatttgaagagcaggaagatggagtgtatttgtataagccatccagttgcttagccaaaccaa |
12284936 |
T |
 |
| Q |
225 |
tcatcttcaaagacattttgtcctatataagaaaatgatcaagagaaaattgtaaagaacaaaataatgactgacacaacttagcaactgaaatgagacg |
324 |
Q |
| |
|
||||||||||||||||| |||||| ||| | ||||| || || ||| |||||||| | | ||||| | ||||| ||||||||| ||||||||| |
|
|
| T |
12284935 |
tcatcttcaaagacattgtgtcctgtatgatgcaatgagcagaagtaaagtgtaaagagtatgacaatgattcacacagcttagcaacagaaatgagatt |
12284836 |
T |
 |
| Q |
325 |
aagagtaaaagttggtgaataaagaacatggctaagataaaaatgtgaagtaaaatagatagtgccaccataatgaac |
402 |
Q |
| |
|
| ||||||||| ||||||||| | |||||| || |||||||||| ||||| ||| ||| ||| ||| |||| ||||| |
|
|
| T |
12284835 |
atgagtaaaagctggtgaatataaaacatgactgagataaaaattggaagtgaaagagacagtaccaacatattgaac |
12284758 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 158 - 402
Target Start/End: Original strand, 19587289 - 19587533
Alignment:
| Q |
158 |
acagaatttgaagaacatgaagatggaaagtatttgtataagccatccagttgcttaaccaaaccaatcatcttcaaagacattttgtcctatataagaa |
257 |
Q |
| |
|
|||||||||||||| || ||||||||| | |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||| | |
|
|
| T |
19587289 |
acagaatttgaagagcaggaagatggagtgcatttgtataagccatccatttgcttagccaaaccaatcatcttcaaagacattgtgtcctgtatgatgc |
19587388 |
T |
 |
| Q |
258 |
aatgatcaagagaaaattgtaaagaacaaaataatgactgacacaacttagcaactgaaatgagacgaagagtaaaagttggtgaataaagaacatggct |
357 |
Q |
| |
|
||||| || || || |||||||| | | ||||| | ||||||||||||||| ||||||||| | ||||||||| ||||||||| | |||||| || |
|
|
| T |
19587389 |
aatgagcagaagtgaagtgtaaagagtatgacaatgattcacacaacttagcaacagaaatgagattatgagtaaaagctggtgaatataaaacatgact |
19587488 |
T |
 |
| Q |
358 |
aagataaaaatgtgaagtaaaatagatagtgccaccataatgaac |
402 |
Q |
| |
|
|||||||||| ||||| ||| ||| ||| ||| |||| ||||| |
|
|
| T |
19587489 |
gagataaaaattggaagtgaaagagacagtaccagcatattgaac |
19587533 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 507 - 626
Target Start/End: Complemental strand, 12284123 - 12284004
Alignment:
| Q |
507 |
ggatcaaggagtaaaacttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaa |
606 |
Q |
| |
|
|||||||| ||||| |||||||| | ||| | ||||||| ||||||||||| ||| ||||||||||| ||||| |||||||| ||||||||||| |||| |
|
|
| T |
12284123 |
ggatcaagaagtaacacttgtgtccttacaatggaaaactaatcattgagacctgtgagaaactgcataatctggtcctcatttctatgagttttagcaa |
12284024 |
T |
 |
| Q |
607 |
atgtagaagcttcacaacga |
626 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
12284023 |
cccttgaagcttcacaacga |
12284004 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 507 - 626
Target Start/End: Original strand, 19588168 - 19588287
Alignment:
| Q |
507 |
ggatcaaggagtaaaacttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaa |
606 |
Q |
| |
|
|||||||| ||||| |||||||| | ||| | ||||| ||||||||||||| ||| ||||||||||| ||||| |||||||| ||||||||||| |||| |
|
|
| T |
19588168 |
ggatcaagaagtaacacttgtgtccttacaatggaaaattgatcattgagacctgtgagaaactgcataatctggtcctcatttctatgagttttagcaa |
19588267 |
T |
 |
| Q |
607 |
atgtagaagcttcacaacga |
626 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
19588268 |
cccttgaagcttcacaacga |
19588287 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 78; Significance: 6e-36; HSPs: 2)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 125 - 402
Target Start/End: Complemental strand, 10744 - 10467
Alignment:
| Q |
125 |
gcattacaagatttattgagaaaactaaaagacacagaatttgaagaacatgaagatggaaagtatttgtataagccatccagttgcttaaccaaaccaa |
224 |
Q |
| |
|
|||||||||||||||| | || |||| | | |||||||||||||| || ||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10744 |
gcattacaagatttatgggaaacactactaaaaacagaatttgaagagcaggaagatggagtgtatttgtataagccatccagttgcttagccaaaccaa |
10645 |
T |
 |
| Q |
225 |
tcatcttcaaagacattttgtcctatataagaaaatgatcaagagaaaattgtaaagaacaaaataatgactgacacaacttagcaactgaaatgagacg |
324 |
Q |
| |
|
||||||||||||||||| |||||| ||| | ||||| || || || |||||||| | | ||||| | ||||| ||||||||| ||||||||| |
|
|
| T |
10644 |
tcatcttcaaagacattgtgtcctgtatgatgcaatgagcagaagtgaagtgtaaagagtatgacaatgattcacacagcttagcaacagaaatgagatt |
10545 |
T |
 |
| Q |
325 |
aagagtaaaagttggtgaataaagaacatggctaagataaaaatgtgaagtaaaatagatagtgccaccataatgaac |
402 |
Q |
| |
|
| ||||||||| ||||||||| | |||||| || |||||||||| ||||| ||| ||| ||| ||| |||| ||||| |
|
|
| T |
10544 |
atgagtaaaagctggtgaatataaaacatgactgagataaaaattggaagtgaaagagacagtaccagcatattgaac |
10467 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 507 - 626
Target Start/End: Complemental strand, 9832 - 9713
Alignment:
| Q |
507 |
ggatcaaggagtaaaacttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaa |
606 |
Q |
| |
|
|||||||| ||||| |||||||| | ||| | ||||| ||||||||||||| ||| ||||||||||| || || |||||||| |||||| |||| |||| |
|
|
| T |
9832 |
ggatcaagaagtaacacttgtgtccttacaatggaaaattgatcattgagacctgtgagaaactgcataatttggtcctcatttctatgaattttagcaa |
9733 |
T |
 |
| Q |
607 |
atgtagaagcttcacaacga |
626 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
9732 |
cctttgaagcttcacaacga |
9713 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 6e-36; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 125 - 402
Target Start/End: Original strand, 22177487 - 22177764
Alignment:
| Q |
125 |
gcattacaagatttattgagaaaactaaaagacacagaatttgaagaacatgaagatggaaagtatttgtataagccatccagttgcttaaccaaaccaa |
224 |
Q |
| |
|
|||||||||||||||| | || |||| | | |||||||||||||| || ||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22177487 |
gcattacaagatttatgggaaacactactaaaaacagaatttgaagagcaggaagatggagtgtatttgtataagccatccagttgcttagccaaaccaa |
22177586 |
T |
 |
| Q |
225 |
tcatcttcaaagacattttgtcctatataagaaaatgatcaagagaaaattgtaaagaacaaaataatgactgacacaacttagcaactgaaatgagacg |
324 |
Q |
| |
|
||||||||||||||||| |||||| ||| | ||||| || || || |||||||| | | ||||| | ||||| ||||||||| ||||||||| |
|
|
| T |
22177587 |
tcatcttcaaagacattgtgtcctgtatgatgcaatgagcagaagtgaagtgtaaagagtatgacaatgattcacacagcttagcaacagaaatgagatt |
22177686 |
T |
 |
| Q |
325 |
aagagtaaaagttggtgaataaagaacatggctaagataaaaatgtgaagtaaaatagatagtgccaccataatgaac |
402 |
Q |
| |
|
| ||||||||| ||||||||| | |||||| || |||||||||| ||||| ||| ||| ||| ||| |||| ||||| |
|
|
| T |
22177687 |
atgagtaaaagctggtgaatataaaacatgactgagataaaaattggaagtgaaagagacagtaccagcatattgaac |
22177764 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 507 - 626
Target Start/End: Original strand, 22178399 - 22178518
Alignment:
| Q |
507 |
ggatcaaggagtaaaacttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaa |
606 |
Q |
| |
|
|||||||| ||||| |||||||| | ||| | ||||| ||||||||||||| ||| ||||||||||| || || |||||||| |||||| |||| |||| |
|
|
| T |
22178399 |
ggatcaagaagtaacacttgtgtccttacaatggaaaattgatcattgagacctgtgagaaactgcataatttggtcctcatttctatgaattttagcaa |
22178498 |
T |
 |
| Q |
607 |
atgtagaagcttcacaacga |
626 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
22178499 |
cctttgaagcttcacaacga |
22178518 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 23168047 - 23168095
Alignment:
| Q |
189 |
atttgtataagccatccagttgcttaaccaaaccaatcatcttcaaaga |
237 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
23168047 |
atttgtataagccatccatctgcttagccaaaccaatcatcttcaaaga |
23168095 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 22643032 - 22642959
Alignment:
| Q |
181 |
tggaaagtatttgtataagccatccagttgcttaaccaaaccaatcatcttcaaagacattttgtcctatataa |
254 |
Q |
| |
|
||||| ||||||||||||||| | || ||||||| | ||||||||| |||||| ||||| ||||||| ||||| |
|
|
| T |
22643032 |
tggaatgtatttgtataagcccttcatttgcttagcaaaaccaatcgtcttcagagacaaattgtcctgtataa |
22642959 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 158 - 402
Target Start/End: Complemental strand, 52777382 - 52777138
Alignment:
| Q |
158 |
acagaatttgaagaacatgaagatggaaagtatttgtataagccatccagttgcttaaccaaaccaatcatcttcaaagacattttgtcctatataagaa |
257 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| | |
|
|
| T |
52777382 |
acagaatttgaagagcaggaagatggagtgtatttgtataagccatccagttgcttagccaaaccaatcatcttcaaagacattgtgtcctgtatgatgc |
52777283 |
T |
 |
| Q |
258 |
aatgatcaagagaaaattgtaaagaacaaaataatgactgacacaacttagcaactgaaatgagacgaagagtaaaagttggtgaataaagaacatggct |
357 |
Q |
| |
|
||||| || || || |||||||| | | ||||| | ||||| ||||||||| ||||||||| | ||||||||| ||||||||| | |||||| || |
|
|
| T |
52777282 |
aatgagcagaagtgaagtgtaaagagtatgacaatgattcacacagcttagcaacagaaatgagattatgagtaaaagctggtgaatataaaacatgact |
52777183 |
T |
 |
| Q |
358 |
aagataaaaatgtgaagtaaaatagatagtgccaccataatgaac |
402 |
Q |
| |
|
|||||||||| ||||| ||| ||| ||| ||| |||| ||||| |
|
|
| T |
52777182 |
gagataaaaattggaagtgaaagagacagtaccagcatattgaac |
52777138 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 507 - 626
Target Start/End: Complemental strand, 52776503 - 52776384
Alignment:
| Q |
507 |
ggatcaaggagtaaaacttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaa |
606 |
Q |
| |
|
|||||||| ||||| |||||||| | ||| | ||||| ||||||||||||| || ||||||||||| || || |||||||| |||||| |||| |||| |
|
|
| T |
52776503 |
ggatcaagaagtaacacttgtgtccttacaatggaaaattgatcattgagaccggtgagaaactgcataatttggtcctcatttctatgaattttagcaa |
52776404 |
T |
 |
| Q |
607 |
atgtagaagcttcacaacga |
626 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
52776403 |
cctttgaagcttcacaacga |
52776384 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 176 - 302
Target Start/End: Complemental strand, 11923957 - 11923831
Alignment:
| Q |
176 |
gaagatggaaagtatttgtataagccatccagttgcttaaccaaaccaatcatcttcaaagacattttgtcctatataagaaaatgatcaagagaaaatt |
275 |
Q |
| |
|
||||| |||| ||||||||||||||||| | || |||| ||||||| |||||||||||||||||||| ||| ||||| | | ||||||||||| |||| |
|
|
| T |
11923957 |
gaagaaggaatgtatttgtataagccataaattttcttagccaaaccgatcatcttcaaagacattttctcccgtataatacattgatcaagagagaatt |
11923858 |
T |
 |
| Q |
276 |
gtaaagaacaaaataatgactgacaca |
302 |
Q |
| |
|
||||| |||| |||| || ||||||| |
|
|
| T |
11923857 |
gtaaaatacaagataaggattgacaca |
11923831 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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