View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15317_high_3 (Length: 692)
Name: NF15317_high_3
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_high_3 |
 | |
|
| [»] scaffold0039 (2 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 629; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 18 - 678
Target Start/End: Original strand, 24486127 - 24486787
Alignment:
| Q |
18 |
gaaagtgcatttcagttggttgatgcataaattgtgacaatttatttattgcaaatgagagatctggcctggttaaagtgatgtactgcagtgcaccaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24486127 |
gaaagtgcatttcagttggttgatgcataaattgtgacaatttatttattgcaaatgagagatctggcctggttaaagtgatgtactgcagtgcaccaat |
24486226 |
T |
|
| Q |
118 |
catactacgaaacatcttggaatcagcagcggcagatccatcattcagcttgagaggagtagtcatacataatggagtgttgaccgacttagcccctgac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24486227 |
catactacgaaacatcttggaatcagcagcggcagatccatcattcagcttgagaggagtagtcatacataatggagtgttgaccgacttagcccctgac |
24486326 |
T |
|
| Q |
218 |
atgttgaacttttccaaaagttctctaatataatcatgctgagataataagagaccatacttggttggaattagttcaattctaaggaaataatgaggga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24486327 |
atgttgaacttttccaaaagttctctaatataaccatgctgagataataagagaccatacttggttggaattagttcaattccaaggaaataatgaggga |
24486426 |
T |
|
| Q |
318 |
agccaagttgtttgagagagaacttagtggaaagctctgtcatgaattgttgtaaaaatgtagtgctgctacctgttaaaagtaaatcatcaacatatac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24486427 |
agccaagttgtttgagagagaacttagtggaaagctctgtcatgaattgttgtaaaaatgtagtgctgctacctgtgaaaagtaaatcatcaacatatac |
24486526 |
T |
|
| Q |
418 |
taacaagaaggcctgcacaccgtgtttgttgtaaataaacaaagatggatcacttaggcttgtacaaaacccaacagagagaacgaatgccttgaaagaa |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24486527 |
taacaagaaggcctgcacaccgtgtttgttgtaaataaacaaagatggatcacttaggcttgtacaaaacccaacagagagaacgaatgccttgagagaa |
24486626 |
T |
|
| Q |
518 |
tcatgccacgcgcgaggtgtttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgct |
617 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24486627 |
tcatgccacgcgcgaggtgcttgtctcaaaccatatatagctttcttaagcttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgct |
24486726 |
T |
|
| Q |
618 |
gcatgtagacattttcagttaattttccttgtaaaaaggcattattgatatccatctgatg |
678 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24486727 |
gcatgtagacatcttcagttaattttccttgtaaaaaggcattattgacatccatctgatg |
24486787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 18 - 678
Target Start/End: Original strand, 24494461 - 24495121
Alignment:
| Q |
18 |
gaaagtgcatttcagttggttgatgcataaattgtgacaatttatttattgcaaatgagagatctggcctggttaaagtgatgtactgcagtgcaccaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494461 |
gaaagtgcatttcagttggttgatgcataaattgtgacaatttatttattgcaaatgagagatctggcctggttaaagtgatgtactgcagtgcaccaat |
24494560 |
T |
|
| Q |
118 |
catactacgaaacatcttggaatcagcagcggcagatccatcattcagcttgagaggagtagtcatacataatggagtgttgaccgacttagcccctgac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494561 |
catactacgaaacatcttggaatcagcagcgtcagatccatcattcagcttgagaggagtagtcatacataatggagtgttgaccgacttagcccctgac |
24494660 |
T |
|
| Q |
218 |
atgttgaacttttccaaaagttctctaatataatcatgctgagataataagagaccatacttggttggaattagttcaattctaaggaaataatgaggga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24494661 |
atgttgaacttttccaaaagttctctaatataaccatgctgagataataagagaccatacttggttggaattagttcaattccaaggaaataatgaggga |
24494760 |
T |
|
| Q |
318 |
agccaagttgtttgagagagaacttagtggaaagctctgtcatgaattgttgtaaaaatgtagtgctgctacctgttaaaagtaaatcatcaacatatac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494761 |
agccaagttgtttgagagagaacttagtggaaagctctgtcatgaattgttgtaaaaatgtagtgctgctacctgttaaaagtaaatcatcaacatatac |
24494860 |
T |
|
| Q |
418 |
taacaagaaggcctgcacaccgtgtttgttgtaaataaacaaagatggatcacttaggcttgtacaaaacccaacagagagaacgaatgccttgaaagaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
24494861 |
taacaagaaggcctgcacaccgtgtttgttgtaaataaacaaagatggatcacttaggcttgtacaaaacccaacatagagaacgaatgccttgagagaa |
24494960 |
T |
|
| Q |
518 |
tcatgccacgcgcgaggtgtttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgct |
617 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494961 |
tcatgccacgcgcgaggtgcttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgct |
24495060 |
T |
|
| Q |
618 |
gcatgtagacattttcagttaattttccttgtaaaaaggcattattgatatccatctgatg |
678 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24495061 |
gcatgtagacatcttcagttaattttccttgtaaaaaggcattattgacatccatctgatg |
24495121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 34295898 - 34295488
Alignment:
| Q |
18 |
gaaagtgcatttcagttggttgatgcataaattgtgacaatttatttattgcaaatgagagatctggcctggttaaagtgatgtactgcagtgcaccaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34295898 |
gaaagtgcatttcagttggttgatgcataaattgtgacaatttatttattgcaaatgagagatctggcctggttaaagtgatgtactgcagtgcaccaat |
34295799 |
T |
|
| Q |
118 |
catactacgaaacatcttggaatcagcagcggcagatccatcattcagcttgagaggagtagtcatacataatggagtgttgaccgacttagcccctgac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34295798 |
catactacgaaacatcttggaatcagcagcgacagatccatcattcagcttgagaggagtagtcatacataatggagtgttgaccgacttagcccctgac |
34295699 |
T |
|
| Q |
218 |
atgttgaacttttccaaaagttctctaatataatcatgctgagataataagagaccatacttggttggaattagttcaattctaaggaaataatgaggga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34295698 |
atgttgaacttttccaaaagttctctaatataaccatgctgagataataagagaccatacttggttggaattagttcaattccaaggaaataatgaggga |
34295599 |
T |
|
| Q |
318 |
agccaagttgtttgagagagaacttagtggaaagctctgtcatgaattgttgtaaaaatgtagtgctgctacctgttaaaagtaaatcatcaacatatac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34295598 |
agccaagttgtttgagagagaacttagtggaaagctctgtcatgaattgttgtaaaaatgtagtgctgctacctgttaaaagtaaatcatcaacatatac |
34295499 |
T |
|
| Q |
418 |
taacaagaagg |
428 |
Q |
| |
|
||||||||||| |
|
|
| T |
34295498 |
taacaagaagg |
34295488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 423 - 678
Target Start/End: Complemental strand, 34293352 - 34293097
Alignment:
| Q |
423 |
agaaggcctgcacaccgtgtttgttgtaaataaacaaagatggatcacttaggcttgtacaaaacccaacagagagaacgaatgccttgaaagaatcatg |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
34293352 |
agaaggcctgcacaccgtgtttgttgtaaataaacaaagatggatcacttaggcttgtacaaaacccaacaaagagaacgaatgccttgagagaatcatg |
34293253 |
T |
|
| Q |
523 |
ccacgcgcgaggtgtttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatg |
622 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34293252 |
ccacgcgcgaggtgcttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatg |
34293153 |
T |
|
| Q |
623 |
tagacattttcagttaattttccttgtaaaaaggcattattgatatccatctgatg |
678 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34293152 |
tagacatcttcagttaattttccttgtaaaaaggcattattgacatccatctgatg |
34293097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 23 - 365
Target Start/End: Original strand, 58580 - 58922
Alignment:
| Q |
23 |
tgcatttcagttggttgatgcataaattgtgacaatttatttattgcaaatgagagatctggcctggttaaagtgatgtactgcagtgcaccaatcatac |
122 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||| || ||||| ||||| || | |
|
|
| T |
58580 |
tgcacttcagttggttgatgcataaattgcgacaatttgtttattgcaaatgagagatcaggcctagttaatgtgatgtattgaagtgctccaataatgc |
58679 |
T |
|
| Q |
123 |
tacgaaacatcttggaatcagcagcggcagatccatcattcagcttgagaggagtagtcatacataatggag-tgttgaccgacttagcccctgacatgt |
221 |
Q |
| |
|
|||||||||| || |||||||||| ||| || |||||||| || ||||||||||||||||| || ||||||| ||||| | |||||||||||||| | |
|
|
| T |
58680 |
tacgaaacatttttgaatcagcaggggctgaaccatcatttagtttgagaggagtagtcatgcacaatggagttgttg-ttgctttagcccctgacatat |
58778 |
T |
|
| Q |
222 |
tgaacttttccaaaagttctctaatataatcatgctgagataataagagaccatacttggttggaattagttcaattctaaggaaataatgagggaagcc |
321 |
Q |
| |
|
|||||| ||||| | |||||| || ||| |||| || ||||||| | |||| | || ||||||| | ||| || | ||| || |||||||| || || |
|
|
| T |
58779 |
tgaactcatccaataattctctgatgtaaccatgttgtgataatagcataccagattttattggaataaattctatgccaagaaagtaatgaggaaatcc |
58878 |
T |
|
| Q |
322 |
aagttgtttgagagagaacttagtggaaagctctgtcatgaatt |
365 |
Q |
| |
|
||||||||||||||| ||||| || ||||| ||||||||||||| |
|
|
| T |
58879 |
aagttgtttgagagaaaactttgttgaaagttctgtcatgaatt |
58922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 678
Target Start/End: Original strand, 59037 - 59200
Alignment:
| Q |
515 |
gaatcatgccacgcgcgaggtgtttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggtt |
614 |
Q |
| |
|
||||||||||| || ||||||| || | ||||||||| || |||||||| || || |||| ||| || |||| |||||| || || || ||||| || | |
|
|
| T |
59037 |
gaatcatgccatgcacgaggtgcctgccacaaaccataaattgctttcttgagcttacaaatatgatgaggaaattcagaatggataaaacctgggggct |
59136 |
T |
|
| Q |
615 |
gctgcatgtagacattttcagttaattttccttgtaaaaaggcattattgatatccatctgatg |
678 |
Q |
| |
|
||||||| || |||| ||||| |||||||||||| || |||||||| || | |||||| ||||| |
|
|
| T |
59137 |
gctgcatatacacatcttcagataattttccttgcaagaaggcattgttaacatccatttgatg |
59200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 517 - 671
Target Start/End: Original strand, 81833 - 81987
Alignment:
| Q |
517 |
atcatgccacgcgcgaggtgtttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgc |
616 |
Q |
| |
|
||||||||| || ||||| || || || || ||||||||||| ||||| |||||||||||||| | |||| |||||| |||||||| || || ||||| |
|
|
| T |
81833 |
atcatgccatgctcgaggagtctgccttaatccatatatagccttcttgagtttgcaaacatgattaggaaattcagaatgaatgaaaccaggtggttgt |
81932 |
T |
|
| Q |
617 |
tgcatgtagacattttcagttaattttccttgtaaaaaggcattattgatatcca |
671 |
Q |
| |
|
| |||| | |||||||| || | || ||||| | ||||||||| |||| ||||| |
|
|
| T |
81933 |
tccatgaaaacattttccgtgagattaccttgaagaaaggcattgttgacatcca |
81987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 671
Target Start/End: Original strand, 32323656 - 32323779
Alignment:
| Q |
548 |
ccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtagacattttcagttaattttcctt |
647 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| | |||| |||||| |||||||| || || ||||| | |||| | |||||||| || | || |||| |
|
|
| T |
32323656 |
ccatatatagccttcttgagtttgcaaacatgattaggaaattcagaatgaatgaaaccaggtggttgttccatgaaaacattttcggtgagattacctt |
32323755 |
T |
|
| Q |
648 |
gtaaaaaggcattattgatatcca |
671 |
Q |
| |
|
| | ||||||||| |||| ||||| |
|
|
| T |
32323756 |
gaagaaaggcattgttgacatcca |
32323779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 671
Target Start/End: Original strand, 18728692 - 18728815
Alignment:
| Q |
548 |
ccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtagacattttcagttaattttcctt |
647 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| | |||| |||||| |||||||| || || ||||| | |||| | |||||||| || | || |||| |
|
|
| T |
18728692 |
ccatatatagccttcttgagtttgcaaacatgattaggaaattcagaatgaatgaaaccaggtggttgttccatgaaaacattttccgtgagattacctt |
18728791 |
T |
|
| Q |
648 |
gtaaaaaggcattattgatatcca |
671 |
Q |
| |
|
| | ||||||||| |||| ||||| |
|
|
| T |
18728792 |
gaagaaaggcattgttgacatcca |
18728815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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