View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15317_high_31 (Length: 257)
Name: NF15317_high_31
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_high_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 918742 - 918505
Alignment:
| Q |
2 |
atgtatactatctccattccttgactgaagaccacacacatatgggtctgttttgtcacaatcagtggagaaccgtcaagaaaagagctatttccagatt |
101 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
918742 |
atgtatactatctccattcattgactgaagaccgcaca--tatgggtctgttttgtcacaatcagtggagaaccgtcaagaaaagagctatttccagatt |
918645 |
T |
|
| Q |
102 |
caaaactataatctttatggatttttctcataaaactctgatgatacactctcataatgaccatgaatataagcactatcagacaataattaagaaaagg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
918644 |
caaaactataatctttatggatttttctcataaaactctgatgatacactctcataatgaccatgaatataagcactatcagacaataattaagaaaagg |
918545 |
T |
|
| Q |
202 |
actatacaaagagaaaaagattaaaatttacatacatatg |
241 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
918544 |
actatacaaagagaaaaggattaaaatttacatacatatg |
918505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University