View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_high_39 (Length: 228)
Name: NF15317_high_39
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_high_39 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2318266 - 2318044
Alignment:
| Q |
1 |
tgacttgtgtagtatttttcagattctttcatttcatttctagtatcaccaataaggaatgaaatttacatcttgtcgtcttcttactttcaggaatctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2318266 |
tgacttgtgtagtatttttcagattctttcatttcatttctagtatcaccaataaggaatgaaatttacatcttgtcgtcttcttacttt-aggaatctc |
2318168 |
T |
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| Q |
101 |
cctttttgagatttgtcaacactctatctccaataaagcctgtcaaggcttctcatgcgacacatgggtttctcggactcaattctccacctctcgtatt |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2318167 |
cctttttgagatttgtcaacactctatctccgataaagcctgtcaaggcttctcatgcgacacatgggtttctcggactcaattctccacccctcgtatt |
2318068 |
T |
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| Q |
201 |
caaggcaccacgtatctgtgctcc |
224 |
Q |
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|||| ||||||||||| ||||||| |
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| T |
2318067 |
caagtcaccacgtatcagtgctcc |
2318044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2309128 - 2308904
Alignment:
| Q |
1 |
tgacttgtgtagtattttt-cagattctttcatttcatttctagtatcaccaataaggaatgaaatttacatcttgtcgtcttcttactttcaggaatct |
99 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
2309128 |
tgacttgtgtagtattttttcggattctttcatttcatttctagtatcatgaataaggaataaaatttacatcttgccgtcttcttactttcaggaatct |
2309029 |
T |
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| Q |
100 |
ccctttttgagatttgtcaacactctatctccaataaagcctgtcaaggcttctcatgcgacacatgggtttctcggactcaattctccacctctcgtat |
199 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2309028 |
ccctttttgagatttgtcaacactctatctccgataaagcctgtcaaggcttctcatgcgacacaggggtttctcggactcaattctccacctctcgtat |
2308929 |
T |
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| Q |
200 |
tcaaggcaccacgtatctgtgctcc |
224 |
Q |
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||||| || | |||||| ||||||| |
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| T |
2308928 |
tcaagtcatcgcgtatcagtgctcc |
2308904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 144899 - 144826
Alignment:
| Q |
94 |
gaatctccctttttgagatttgtcaacactctatctccaataaagcctgtcaaggcttctcatgcgacacatgg |
167 |
Q |
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||||||||| ||||||||||||| |||||| |||||| ||||||| |||||||||||||||||| ||||||||| |
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| T |
144899 |
gaatctccccttttgagatttgttaacactttatctctaataaagtctgtcaaggcttctcatgtgacacatgg |
144826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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