View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15317_low_1 (Length: 860)

Name: NF15317_low_1
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15317_low_1
NF15317_low_1
[»] chr3 (28 HSPs)
chr3 (19-851)||(38626070-38626902)
chr3 (92-167)||(39657982-39658057)
chr3 (93-171)||(42644300-42644379)
chr3 (131-177)||(48089641-48089687)
chr3 (93-196)||(30958105-30958209)
chr3 (93-196)||(30973917-30974021)
chr3 (133-171)||(7012678-7012716)
chr3 (135-173)||(24916576-24916614)
chr3 (93-171)||(31766160-31766238)
chr3 (133-170)||(10852738-10852775)
chr3 (133-170)||(23918881-23918918)
chr3 (133-190)||(50664777-50664834)
chr3 (135-190)||(1441362-1441417)
chr3 (93-180)||(25181239-25181326)
chr3 (92-171)||(32112088-32112167)
chr3 (124-171)||(40415312-40415359)
chr3 (92-171)||(44225603-44225682)
chr3 (85-164)||(49158621-49158700)
chr3 (135-193)||(3776594-3776652)
chr3 (129-171)||(7899143-7899185)
chr3 (129-171)||(16246115-16246157)
chr3 (133-171)||(23496355-23496393)
chr3 (93-171)||(41115275-41115353)
chr3 (129-171)||(52931593-52931635)
chr3 (134-171)||(31084245-31084282)
chr3 (133-186)||(34561131-34561184)
chr3 (135-188)||(41591308-41591361)
chr3 (134-179)||(49526695-49526740)
[»] chr8 (21 HSPs)
chr8 (439-670)||(34622376-34622607)
chr8 (130-196)||(2764419-2764485)
chr8 (135-190)||(15206723-15206778)
chr8 (133-171)||(19649232-19649270)
chr8 (93-188)||(32994153-32994250)
chr8 (135-196)||(16972019-16972080)
chr8 (135-179)||(32767475-32767519)
chr8 (133-168)||(10552934-10552969)
chr8 (93-196)||(18123295-18123398)
chr8 (92-171)||(29970848-29970927)
chr8 (93-196)||(32927961-32928064)
chr8 (149-196)||(43492206-43492253)
chr8 (133-171)||(22936818-22936856)
chr8 (133-171)||(31246340-31246378)
chr8 (134-180)||(33588757-33588803)
chr8 (92-170)||(38715193-38715271)
chr8 (133-171)||(43550937-43550975)
chr8 (135-196)||(36447703-36447764)
chr8 (134-171)||(36779437-36779474)
chr8 (106-171)||(38516344-38516409)
chr8 (136-177)||(38875211-38875252)
[»] chr7 (18 HSPs)
chr7 (93-193)||(40491650-40491750)
chr7 (94-179)||(15311189-15311274)
chr7 (131-196)||(40561709-40561774)
chr7 (129-169)||(26975305-26975345)
chr7 (135-195)||(45557435-45557495)
chr7 (136-190)||(18350120-18350174)
chr7 (93-167)||(42481803-42481877)
chr7 (135-179)||(29829324-29829368)
chr7 (133-177)||(38230121-38230165)
chr7 (133-171)||(42752203-42752241)
chr7 (133-171)||(48459769-48459807)
chr7 (134-171)||(4228606-4228643)
chr7 (133-170)||(10371970-10372007)
chr7 (135-196)||(12306792-12306853)
chr7 (133-170)||(20088929-20088966)
chr7 (136-197)||(22310415-22310476)
chr7 (135-196)||(27571931-27571992)
chr7 (214-282)||(45369107-45369176)
[»] chr2 (17 HSPs)
chr2 (136-196)||(15220817-15220877)
chr2 (134-179)||(3853939-3853984)
chr2 (135-196)||(16518847-16518908)
chr2 (92-171)||(12110921-12111000)
chr2 (129-171)||(11005710-11005752)
chr2 (133-171)||(23359953-23359991)
chr2 (106-162)||(3716571-3716627)
chr2 (135-171)||(10918650-10918686)
chr2 (129-196)||(32307153-32307220)
chr2 (92-163)||(40704682-40704753)
chr2 (133-171)||(1945062-1945100)
chr2 (133-171)||(23377551-23377589)
chr2 (129-171)||(31224727-31224769)
chr2 (92-169)||(10618862-10618939)
chr2 (133-170)||(30007576-30007613)
chr2 (134-171)||(34433330-34433367)
chr2 (134-171)||(42089552-42089589)
[»] chr4 (21 HSPs)
chr4 (129-196)||(22683933-22684000)
chr4 (92-180)||(39000531-39000619)
chr4 (93-171)||(38740287-38740365)
chr4 (92-190)||(43868211-43868309)
chr4 (135-196)||(33843780-33843841)
chr4 (134-171)||(36150627-36150664)
chr4 (92-169)||(48575480-48575557)
chr4 (136-177)||(54487248-54487289)
chr4 (135-195)||(25927376-25927436)
chr4 (214-276)||(2171738-2171801)
chr4 (137-196)||(17898085-17898144)
chr4 (129-196)||(25319117-25319184)
chr4 (129-168)||(46382869-46382908)
chr4 (133-171)||(16566328-16566366)
chr4 (133-171)||(22699765-22699803)
chr4 (133-171)||(22980727-22980765)
chr4 (133-171)||(22994314-22994352)
chr4 (129-171)||(41866177-41866219)
chr4 (129-171)||(52062999-52063041)
chr4 (134-171)||(14597650-14597687)
chr4 (133-170)||(28947774-28947811)
[»] chr6 (14 HSPs)
chr6 (131-193)||(882758-882820)
chr6 (86-192)||(1499973-1500079)
chr6 (129-168)||(25208723-25208762)
chr6 (92-201)||(3524989-3525098)
chr6 (93-197)||(8856375-8856479)
chr6 (98-150)||(9043722-9043774)
chr6 (129-169)||(20846423-20846463)
chr6 (141-197)||(34620954-34621010)
chr6 (141-197)||(34748391-34748447)
chr6 (135-197)||(434192-434254)
chr6 (129-171)||(16442371-16442413)
chr6 (133-171)||(16548177-16548215)
chr6 (134-171)||(7486524-7486561)
chr6 (134-190)||(8551118-8551175)
[»] chr1 (25 HSPs)
chr1 (133-171)||(29759713-29759751)
chr1 (104-158)||(47307505-47307559)
chr1 (93-170)||(13344836-13344913)
chr1 (135-196)||(34915135-34915196)
chr1 (135-196)||(35961437-35961498)
chr1 (107-171)||(4347036-4347100)
chr1 (134-190)||(7301834-7301890)
chr1 (129-169)||(7335901-7335941)
chr1 (85-196)||(12655314-12655424)
chr1 (135-197)||(5268287-5268349)
chr1 (133-190)||(44786871-44786928)
chr1 (95-171)||(3887364-3887439)
chr1 (129-169)||(32365143-32365183)
chr1 (145-196)||(213246-213297)
chr1 (93-172)||(40642990-40643069)
chr1 (141-196)||(48548975-48549030)
chr1 (133-171)||(1199889-1199927)
chr1 (133-171)||(20800303-20800341)
chr1 (133-179)||(33693088-33693134)
chr1 (133-171)||(35569228-35569266)
chr1 (133-171)||(40352453-40352491)
chr1 (133-171)||(48510970-48511008)
chr1 (135-169)||(50751256-50751290)
chr1 (135-196)||(7524182-7524243)
chr1 (90-167)||(26253024-26253101)
[»] scaffold0172 (1 HSPs)
scaffold0172 (92-171)||(15241-15320)
[»] chr5 (19 HSPs)
chr5 (96-179)||(29922986-29923069)
chr5 (129-171)||(2483732-2483774)
chr5 (129-171)||(2868371-2868413)
chr5 (141-179)||(4306598-4306636)
chr5 (133-171)||(22811078-22811116)
chr5 (136-169)||(24036627-24036660)
chr5 (108-168)||(5465398-5465458)
chr5 (108-168)||(6988217-6988277)
chr5 (214-277)||(10898672-10898736)
chr5 (129-193)||(10957205-10957268)
chr5 (129-196)||(28304821-28304888)
chr5 (133-171)||(19784865-19784903)
chr5 (133-171)||(22482241-22482279)
chr5 (133-167)||(35816985-35817019)
chr5 (217-286)||(38045390-38045460)
chr5 (108-197)||(10273268-10273357)
chr5 (214-278)||(29922575-29922640)
chr5 (134-175)||(40885259-40885300)
chr5 (134-171)||(43152386-43152423)
[»] scaffold0393 (1 HSPs)
scaffold0393 (214-279)||(12378-12444)
[»] scaffold0361 (1 HSPs)
scaffold0361 (141-197)||(14075-14131)
[»] scaffold0031 (1 HSPs)
scaffold0031 (129-170)||(99701-99742)
[»] scaffold0009 (1 HSPs)
scaffold0009 (133-170)||(199394-199431)
[»] scaffold0005 (1 HSPs)
scaffold0005 (134-171)||(219691-219728)


Alignment Details
Target: chr3 (Bit Score: 784; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 784; E-Value: 0
Query Start/End: Original strand, 19 - 851
Target Start/End: Complemental strand, 38626902 - 38626070
Alignment:
Q  19 ctgtcattgcaagttccaacagcagtattgcatagaagttgcttgtgtatttgtctctaactgaatgtgacataaattgatttttaatgaattgattatg 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626902 ctgtcattgcaagttccaacagtagtattgcatagaagttgcttgtgtatttgtctctaactgaatgtgacataaattgatttttaatgaattgattatg 38626803  T
Q  119 taaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaagatacaaattcaagtctcaag 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  38626802 taaagtcgactttagttaaaagtgagttgaatgtgaaatgatttatgtttggacatattcacgtggaagtgagttgaaagatacaaattcaagtctcaag 38626703  T
Q  219 ttataatcaattcccgaggcaaaatcaattttactggaaacatccaaacatgtcaaaataaaatttgctccatccaaaattgagacgaaacacacacata 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38626702 ttataatcaattcccgaggcaaaatcaattttactggaaacatccaaacatgtcaaaataaaatttgctccatccaaaattgagacgaaacgcacacata 38626603  T
Q  319 attttctgtgtgtctttaattttttaatcttatgttgtttctttcgtgtacctgctagtgttaaacatggcttgtttcttgttccagattgatttgatgg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626602 attttctgtgtgtctttaattttttaatcttatgttgtttctttcgtgtacctgctagtgttaaacatggcttgtttcttgttccagattgatttgatgg 38626503  T
Q  419 gattattaaggcaatcaaagtattggcaaaggtctggaggtagagaccacatatttcctatgacacatcccaatgcatttaggttcttgcgagatcagct 518  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626502 gattattagggcaatcaaagtattggcaaaggtctggaggtagagaccacatatttcctatgacacatcccaatgcatttaggttcttgcgagatcagct 38626403  T
Q  519 gaacgagtctattcaggttgttgttgattttggccgttaccccaaaggtgtatctaatttgaacaaggatgtagtgtccccatatgtacatttcgtagat 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626402 gaacgagtctattcaggttgttgttgattttggccgttaccccaaaggtgtatctaatttgaacaaggatgtagtgtccccatatgtacatttcgtagat 38626303  T
Q  619 tcttatgtagatgatgagcctcatgatccgtttgagtctcgcaccacactgcnnnnnnncagaggggggacacaccgtaaggatgtatgtatttatgttg 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  38626302 tcttatgtagatgatgagcctcatgatccgtttgagtctcgcaccacactgctttttttcagaggggggacacaccgtaaggatgtatgtatttatgttg 38626203  T
Q  719 atgagatttaattgaaggaataatgctgacctccttatacttacaggcaacttgatttttggggtgtgtcatgtttgcagaaaggcattgttcgtgctaa 818  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626202 atgagatttaattgaaggaataatgctgacttccttatacttacaggcaacttgatttttggggtgtgtcatgtttgcagaaaggcattgttcgtgctaa 38626103  T
Q  819 attcacaaagatattagctggttttgatgatgt 851  Q
    |||||||||||||||||||||||||||||||||    
T  38626102 attcacaaagatattagctggttttgatgatgt 38626070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 39657982 - 39658057
Alignment:
Q  92 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtt 167  Q
    ||||||||||| ||| ||||||||||||||| | || |||| ||||||||  |||||||||||||| |||||||||    
T  39657982 aaattgattttgaataaattgattatgtaaaattgattttacttaaaagttcgttgaatgtaaaataatttatgtt 39658057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 42644379 - 42644300
Alignment:
Q  93 aattgatttttaatgaattgattatgtaaag-tcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||| | |||||||||| | ||||  | || ||||||||||||||||||||||||||| |||||||||||||||    
T  42644379 aattgattttgagtgaattgattttataaaaattgattttagttaaaagtgagttgaatgtaaagtgatttatgtttgga 42644300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 48089641 - 48089687
Alignment:
Q  131 tagttaaaagtgagttgaatgtaaaatgatttatgtttggacacatt 177  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  48089641 tagttaaaagtgagttgaatgtaaaatgatttatgattggatacatt 48089687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 30958209 - 30958105
Alignment:
Q  93 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaa-atgatttatgtttggacacattcacgtagaagtgag 191  Q
    |||||||||| |||||||||||| |||||| | || ||| | |||| ||||||||||||||||  | ||||||||||||| | ||||| ||| ||||||     
T  30958209 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtgaa 30958110  T
Q  192 ttgaa 196  Q
    |||||    
T  30958109 ttgaa 30958105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 30974021 - 30973917
Alignment:
Q  93 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaa-atgatttatgtttggacacattcacgtagaagtgag 191  Q
    |||||||||| |||||||||||| |||||| | || ||| | |||| ||||||||||||||||  | ||||||||||||| | ||||| ||| ||||||     
T  30974021 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtgaa 30973922  T
Q  192 ttgaa 196  Q
    |||||    
T  30973921 ttgaa 30973917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 7012716 - 7012678
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  7012716 gttaaaagtgagttgaatgtaaagtgatttatgtttgga 7012678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 24916614 - 24916576
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggaca 173  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  24916614 taaaagtgagttgaatgtaaaatgatttatgtttagaca 24916576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 31766160 - 31766238
Alignment:
Q  93 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||| |||||||||||| |||||| |  | ||| | |||||||||||||||  |||| |||||||||||||||    
T  31766160 aattgattttgaatgaattgattttgtaaaattaattttggataaaagtgagttgaagttaaagtgatttatgtttgga 31766238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 10852738 - 10852775
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 170  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  10852738 gttaaaagtgagttgaatgtaaagtgatttatgtttgg 10852775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 23918918 - 23918881
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 170  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  23918918 gttaaaagtgagttgaatgtaaagtgatttatgtttgg 23918881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 50664834 - 50664777
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 190  Q
    |||||||||||||||||||| || ||||||||||||||| |||  ||| |||||||||    
T  50664834 gttaaaagtgagttgaatgtgaattgatttatgtttggatacacacacttagaagtga 50664777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 1441362 - 1441417
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 190  Q
    ||||||||||||||| ||||| |||||| ||||| || ||||||||||| ||||||    
T  1441362 taaaagtgagttgaacgtaaagtgatttgtgtttagatacattcacgtaaaagtga 1441417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 25181326 - 25181239
Alignment:
Q  93 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcac 180  Q
    ||||||| || | |||||||||| |||| | | || |||  ||||||||||||| |||||||||| ||||||||||||| || |||||    
T  25181326 aattgatattgattgaattgattttgtagaattgattttgattaaaagtgagtttaatgtaaaattatttatgtttggataccttcac 25181239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 32112167 - 32112088
Alignment:
Q  92 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||| | ||||||||||||||||| | || | | | ||||| ||||||||||| ||| | |||||||||||||    
T  32112167 aaattgattttgagtgaattgattatgtaaaattgattatggataaaaatgagttgaatgaaaagtaatttatgtttgga 32112088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 40415312 - 40415359
Alignment:
Q  124 tcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||| ||||||||||||||||||| ||||||| | |||||||||||||    
T  40415312 tcgattttagttaaaagtgagttggatgtaaattaatttatgtttgga 40415359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 44225682 - 44225603
Alignment:
Q  92 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||| |   |||||||| |||| | | || ||| |||||||||||||| |||||||| |||||||||||||||    
T  44225682 aaattgattttaatataattgattttgtagaattgattttcgttaaaagtgagtttaatgtaaagtgatttatgtttgga 44225603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 49158700 - 49158621
Alignment:
Q  85 gtgacataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttat 164  Q
    |||| ||||||||||||| |||||||||||| |||||| | || || || ||||||||| | |||| ||| |||||||||    
T  49158700 gtgatataaattgattttgaatgaattgattttgtaaaattgatttaagataaaagtgactagaatataagatgatttat 49158621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 3776652 - 3776594
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagtt 193  Q
    ||||| ||||||||||||||| ||||||||| ||||| ||||| | ||| |||||||||    
T  3776652 taaaattgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtgagtt 3776594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 7899143 - 7899185
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||  |||||||||||||| ||||||||||||||    
T  7899143 tttagttaaaagatagttgaatgtaaaacgatttatgtttgga 7899185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 16246115 - 16246157
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||||||||  ||||||| |||||||||||||||    
T  16246115 tttagttaaaagtgagttagatgtaaattgatttatgtttgga 16246157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 23496393 - 23496355
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||| || |||||||||||||||    
T  23496393 gttaaaagtgagttgaatgtgaattgatttatgtttgga 23496355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 41115275 - 41115353
Alignment:
Q  93 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||| | |||||||||||| |||| | | || ||| | ||| | |||||||||||||||||| ||||||||||||    
T  41115275 aattgattatgaatgaattgattttgtataattgattttggctaacaatgagttgaatgtaaaatggtttatgtttgga 41115353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 52931593 - 52931635
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||| | |||||| |||||||||||||||    
T  52931593 tttagttaaaagtgagtttagtgtaaattgatttatgtttgga 52931635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 31084282 - 31084245
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||||||||| || |||||||||||||||    
T  31084282 ttaaaagtgagttgaatgtgaattgatttatgtttgga 31084245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 34561184 - 34561131
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaa 186  Q
    |||||||||||||||||||  || ||||||||||||||| ||||| || |||||    
T  34561184 gttaaaagtgagttgaatgcgaattgatttatgtttggatacattgacttagaa 34561131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 41591308 - 41591361
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagt 188  Q
    ||||| |||||||||| |||| ||||||||||||||| ||||||| ||| ||||    
T  41591308 taaaaatgagttgaatttaaagtgatttatgtttggatacattcatgtaaaagt 41591361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 49526695 - 49526740
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttggacacattca 179  Q
    |||||||||| |||| |||||| ||||||||||||||| |||||||    
T  49526695 ttaaaagtgaattgattgtaaattgatttatgtttggatacattca 49526740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 439 - 670
Target Start/End: Original strand, 34622376 - 34622607
Alignment:
Q  439 tattggcaaaggtctggaggtagagaccacatatttcctatgacacatcccaatgcatttaggttcttgcgagatcagctgaacgagtctattcaggttg 538  Q
    |||||||| ||||||  ||| ||||||||  |||||||||||||||| |||||||| ||||| ||| | ||  ||||  |||| ||  ||||||| ||||    
T  34622376 tattggcagaggtctaaaggcagagaccatgtatttcctatgacacaccccaatgcctttagattcctacgtaatcaattgaatgatactattcaagttg 34622475  T
Q  539 ttgttgattttggccgttaccccaaaggtgtatctaatttgaacaaggatgtagtgtccccatatgtacatttcgtagattcttatgtagatgatgagcc 638  Q
    |||| ||||||||||| ||||| || ||  | ||||||||||| || ||||| |||||||| ||||| ||| | || |||||||||  ||||||||| ||    
T  34622476 ttgtggattttggccgctaccctaagggcatgtctaatttgaataaagatgtggtgtccccgtatgttcatgttgtggattcttatacagatgatgaacc 34622575  T
Q  639 tcatgatccgtttgagtctcgcaccacactgc 670  Q
    ||| |||||||  |||  |||| |||||||||    
T  34622576 tcaagatccgtacgagattcgctccacactgc 34622607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 2764419 - 2764485
Alignment:
Q  130 ttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    |||||||||||| |||||||| |||| |||||||| |||||| ||||||||||| ||||||||||||    
T  2764419 ttagttaaaagtaagttgaatataaagtgatttatatttggatacattcacgtaaaagtgagttgaa 2764485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 15206778 - 15206723
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 190  Q
    |||||||||||||||||| || ||||||||||||||| ||||| || |||||||||    
T  15206778 taaaagtgagttgaatgtgaattgatttatgtttggatacattgacttagaagtga 15206723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 19649270 - 19649232
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  19649270 gttaaaagtgagttgaatgtaaagtgatttatgtttgga 19649232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 32994153 - 32994250
Alignment:
Q  93 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaa--tgatttatgtttggacacattcacgtagaagt 188  Q
    |||||||||| |||||| |||||||||||| | || | | | | ||||||||||||| ||||||  |||||||||||||||| |||||| ||| ||||    
T  32994153 aattgattttgaatgaactgattatgtaaaattgattctggctgaaagtgagttgaaggtaaaatttgatttatgtttggactcattcatgtaaaagt 32994250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 16972019 - 16972080
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    ||||||||||||||| |||||||||||| |||||| | ||||||| ||| |||||| |||||    
T  16972019 taaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaa 16972080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 32767519 - 32767475
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattca 179  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||    
T  32767519 taaaagtgagttggatgtaaattgatttatgtttggatacattca 32767475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 10552934 - 10552969
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgttt 168  Q
    ||||||||||||||||||||||| ||||||||||||    
T  10552934 gttaaaagtgagttgaatgtaaattgatttatgttt 10552969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 18123398 - 18123295
Alignment:
Q  93 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagt 192  Q
    |||||||||  | ||||||||| ||||||| |||||| ||  ||||||||| ||||| |||||||||||| |||| | | | ||| | ||| ||||||||    
T  18123398 aattgatttagagtgaattgatgatgtaaaatcgactctaactaaaagtgaattgaaggtaaaatgatttgtgttggaatatatttatgtaaaagtgagt 18123299  T
Q  193 tgaa 196  Q
    ||||    
T  18123298 tgaa 18123295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 29970927 - 29970848
Alignment:
Q  92 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||| |  ||||||| | |||| | | || |||||||||||||||||||| | |||| |||||||||||||||    
T  29970927 aaattgattttgatagaattgaatttgtataattgattttagttaaaagtgagttgagtttaaagtgatttatgtttgga 29970848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 32928064 - 32927961
Alignment:
Q  93 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagt 192  Q
    |||||||||| |  |||||||||||||||| | || | |   ||||| ||||||||| | ||| |||||| |||||||| ||||||| ||| ||||||||    
T  32928064 aattgattttgagggaattgattatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagt 32927965  T
Q  193 tgaa 196  Q
    ||||    
T  32927964 tgaa 32927961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 43492206 - 43492253
Alignment:
Q  149 atgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    ||||||||||||||||||||||| ||||||| ||| |||| |||||||    
T  43492206 atgtaaaatgatttatgtttggatacattcatgtaaaagtaagttgaa 43492253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 22936818 - 22936856
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||| || |||||||||||||||    
T  22936818 gttaaaagtgagttgaatgtgaattgatttatgtttgga 22936856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 31246340 - 31246378
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||| || |||||||||||||||    
T  31246340 gttaaaagtgagttgaatgtgaattgatttatgtttgga 31246378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 33588803 - 33588757
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcac 180  Q
    ||||||||||||| |||||||||| ||||||||||||| || |||||    
T  33588803 ttaaaagtgagtttaatgtaaaattatttatgtttggataccttcac 33588757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 38715193 - 38715271
Alignment:
Q  92 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgg 170  Q
    ||||||||||| | |||||||||| || | | | || ||||||||||| |||||| | |||||| ||||||||||||||    
T  38715193 aaattgattttaattgaattgattttgcagaattgattttagttaaaattgagttaagtgtaaagtgatttatgtttgg 38715271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 43550975 - 43550937
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||| || |||||||||||||||    
T  43550975 gttaaaagtgagttgaatgtgaattgatttatgtttgga 43550937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 36447703 - 36447764
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    |||||||||||||||| ||||||||||| ||||| || ||||| | ||| || |||||||||    
T  36447703 taaaagtgagttgaatataaaatgatttgtgtttagatacatttatgtataactgagttgaa 36447764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 36779474 - 36779437
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||||| | |||||||||||||    
T  36779474 ttaaaagtgagttgaatgtaaagtaatttatgtttgga 36779437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 38516409 - 38516344
Alignment:
Q  106 tgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||| |||| | | || ||| | ||| ||||||||||||||||| |||||||||||||||    
T  38516409 tgaattgattttgtagaattgattttcgataatagtgagttgaatgtaaagtgatttatgtttgga 38516344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 38875211 - 38875252
Alignment:
Q  136 aaaagtgagttgaatgtaaaatgatttatgtttggacacatt 177  Q
    ||||||||||| |||||||| ||||||||||||||| |||||    
T  38875211 aaaagtgagttcaatgtaaagtgatttatgtttggatacatt 38875252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 40491750 - 40491650
Alignment:
Q  93 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagt 192  Q
    |||||||||| | |||||||||| |||||| | || |||   ||||||||||||||| ||||| |||||||| |||||| ||||||| ||| ||||||||    
T  40491750 aattgattttgagtgaattgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagt 40491651  T
Q  193 t 193  Q
    |    
T  40491650 t 40491650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 15311189 - 15311274
Alignment:
Q  94 attgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattca 179  Q
    ||||||||| ||  |||||||| |||||| | || | | ||||||||||||||||||||| | ||||||||||||||| |||||||    
T  15311189 attgattttgaactaattgattgtgtaaaattgaatatggttaaaagtgagttgaatgtatagtgatttatgtttggatacattca 15311274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 40561709 - 40561774
Alignment:
Q  131 tagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    |||| |||| ||||||||| ||||| ||||||||||||||| ||||||| ||| ||||||||||||    
T  40561709 tagtaaaaattgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaa 40561774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 26975305 - 26975345
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttg 169  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  26975305 tttagttataagtgagttgaatgtaaaatgatttatgtttg 26975345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 45557495 - 45557435
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttga 195  Q
    ||||||||||||||| ||||| |||||| |||||||| ||||||| ||| |||||||||||    
T  45557495 taaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttga 45557435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 18350120 - 18350174
Alignment:
Q  136 aaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 190  Q
    |||||||||||||||||||||||||||||||||  | ||||||||| | ||||||    
T  18350120 aaaagtgagttgaatgtaaaatgatttatgtttacatacattcacgaaaaagtga 18350174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 42481803 - 42481877
Alignment:
Q  93 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtt 167  Q
    |||||||||| | ||||||||||||||||| | || | |    ||||||||||||||||||||||||||||||||    
T  42481803 aattgattttaagtgaattgattatgtaaaattgattctgaaaaaaagtgagttgaatgtaaaatgatttatgtt 42481877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 29829324 - 29829368
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattca 179  Q
    ||||| ||||||||||||||| ||||||||||||||| |||||||    
T  29829324 taaaaatgagttgaatgtaaagtgatttatgtttggatacattca 29829368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 38230165 - 38230121
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacatt 177  Q
    |||||||||||||||||||| || ||||||||||||||| |||||    
T  38230165 gttaaaagtgagttgaatgtgaattgatttatgtttggatacatt 38230121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 42752203 - 42752241
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||| || |||||||||||||||    
T  42752203 gttaaaagtgagttgaatgtgaattgatttatgtttgga 42752241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 48459807 - 48459769
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||| || |||||||||||||||    
T  48459807 gttaaaagtgagttgaatgtgaattgatttatgtttgga 48459769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 4228643 - 4228606
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  4228643 ttaaaagtgagttgaatgaaaagtgatttatgtttgga 4228606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 10371970 - 10372007
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 170  Q
    |||||||||||||||||||| || ||||||||||||||    
T  10371970 gttaaaagtgagttgaatgtgaattgatttatgtttgg 10372007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 12306853 - 12306792
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    |||||||||||||||  |||| ||||||||||||||  | ||||| ||| ||||||||||||    
T  12306853 taaaagtgagttgaagataaagtgatttatgtttggctagattcatgtaaaagtgagttgaa 12306792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 20088966 - 20088929
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 170  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  20088966 gttaaaagtgagttgaacgtaaagtgatttatgtttgg 20088929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 22310415 - 22310476
Alignment:
Q  136 aaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 197  Q
    |||| |||||||||  ||||| |||||||||||||| |||||| |||| |||||| ||||||    
T  22310415 aaaattgagttgaagataaaaagatttatgtttggatacattctcgtaaaagtgaattgaaa 22310476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 27571992 - 27571931
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    |||||||||||| || ||||||||||||||| ||||| ||||| | ||| | ||||||||||    
T  27571992 taaaagtgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgagttgaa 27571931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 45369176 - 45369107
Alignment:
Q  214 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaataaaat 282  Q
    |||||||| |||||||||  || |||||||||||| |||| || ||||||||||||| ||||||| ||||    
T  45369176 tcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaacatctcaaaatcaaat 45369107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 15220817 - 15220877
Alignment:
Q  136 aaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| ||  ||||||||||||    
T  15220817 aaaagtgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgagttgaa 15220877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 3853984 - 3853939
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttggacacattca 179  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||    
T  3853984 ttaaaagtgagttgaatgtaaattgatttatgtttggatacattca 3853939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 16518908 - 16518847
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    ||||||||||||||  |||||||||||| |||||||| ||||||| ||| ||||||||||||    
T  16518908 taaaagtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaa 16518847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 12111000 - 12110921
Alignment:
Q  92 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||| |  ||||||||| ||| || | || ||| |||||||||||||||||| |||| |||||||||||||||    
T  12111000 aaattgattttgatagaattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgtttgga 12110921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 11005710 - 11005752
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  11005710 tttagttaatagtgacttgaatgtaaaatgatttatgtttgga 11005752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 23359953 - 23359991
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  23359953 gttaaaagtgagttgaatgtaaagtgatttatgtttgga 23359991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 3716571 - 3716627
Alignment:
Q  106 tgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgattt 162  Q
    |||||||||||| ||||||  | ||||||||||| ||||||||| ||||||||||||    
T  3716571 tgaattgattatctaaagtttattttagttaaaaatgagttgaaggtaaaatgattt 3716627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 10918686 - 10918650
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||||||||||| |||||||||||||||    
T  10918686 taaaagtgagttgaatgtaaagtgatttatgtttgga 10918650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 32307220 - 32307153
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    ||||||||||| ||||| ||||||||||||  |||| |||||| | |||||| || ||||||||||||    
T  32307220 tttagttaaaattgagtcgaatgtaaaatggcttatatttggataaattcacataaaagtgagttgaa 32307153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 40704753 - 40704682
Alignment:
Q  92 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgattta 163  Q
    ||||||||||| |||||||||||||||| || | || ||| ||||||| | | ||||||||||| |||||||    
T  40704753 aaattgattttgaatgaattgattatgtgaaattgattttggttaaaatttatttgaatgtaaattgattta 40704682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 1945062 - 1945100
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||| || |||||||||||||||    
T  1945062 gttaaaagtgagttgaatgtgaattgatttatgtttgga 1945100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 23377589 - 23377551
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  23377589 gttaaaagtgagttgaatgtaagttgatttatgtttgga 23377551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 31224769 - 31224727
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||||||||| |||| || |||||||||||||||    
T  31224769 tttagttaaaagtgagttggatgtgaattgatttatgtttgga 31224727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 10618862 - 10618939
Alignment:
Q  92 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttg 169  Q
    ||||||||||||| |||||||||| |||||| | || | ||| ||||| ||| ||||| ||||| ||| |||||||||    
T  10618862 aaattgatttttagtgaattgattttgtaaaattgattctagctaaaaatgaattgaaggtaaagtgaattatgtttg 10618939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 30007576 - 30007613
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 170  Q
    |||||||||||||||||||| || ||||||||||||||    
T  30007576 gttaaaagtgagttgaatgtgaattgatttatgtttgg 30007613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 34433330 - 34433367
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||||||||| || |||||||||||||||    
T  34433330 ttaaaagtgagttgaatgtgaattgatttatgtttgga 34433367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 42089552 - 42089589
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||||||||| || |||||||||||||||    
T  42089552 ttaaaagtgagttgaatgtgaattgatttatgtttgga 42089589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 22684000 - 22683933
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||| | ||| ||| ||||||||    
T  22684000 tttacttaaaagtgagttgaaagtaaaatggtttatgtttggacacatttatgtaaaagcgagttgaa 22683933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 39000531 - 39000619
Alignment:
Q  92 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcac 180  Q
    ||||||||||| | |||||||||| |||| | | || |||||||||||||||| | |||  ||||||||||||||||||| || |||||    
T  39000531 aaattgattttgattgaattgattttgtagaattgagtttagttaaaagtgagcttaataaaaaatgatttatgtttggataccttcac 39000619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 38740287 - 38740365
Alignment:
Q  93 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||| |||||||||||| |||||| | || ||| | |||||||||||||||  | || |||||||||||||||    
T  38740287 aattgattttgaatgaattgattttgtaaaattgattttggataaaagtgagttgaagttgaagtgatttatgtttgga 38740365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 43868309 - 43868211
Alignment:
Q  92 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 190  Q
    ||||||||||| |||||||||||| |||||| |  | | ||||||||||| ||||||| ||||| |||||| | |||||| ||||| | ||| ||||||    
T  43868309 aaattgattttgaatgaattgattttgtaaaattaattctagttaaaagtaagttgaaagtaaagtgatttgtctttggatacatttatgtaaaagtga 43868211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 33843841 - 33843780
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    ||||||||||||| ||||||| ||||||||||||||| | ||||| |||  |||||||||||    
T  33843841 taaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaa 33843780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 36150664 - 36150627
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||||| |||||||||||||||    
T  36150664 ttaaaagtgagttgaatgtaaagtgatttatgtttgga 36150627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 48575557 - 48575480
Alignment:
Q  92 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttg 169  Q
    ||||| ||||| |||||||||||| |||||| | || ||| | ||||| |||||||||||||||||| ||||| ||||    
T  48575557 aaattaattttgaatgaattgattttgtaaaattgatttttgataaaaatgagttgaatgtaaaatggtttatttttg 48575480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 54487248 - 54487289
Alignment:
Q  136 aaaagtgagttgaatgtaaaatgatttatgtttggacacatt 177  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  54487248 aaaagtgagttgaatgtaaattgatttatgtttggatacatt 54487289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 25927436 - 25927376
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttga 195  Q
    ||||||||||||||| |||||||| ||||| ||| || ||||||||||| |||||| ||||    
T  25927436 taaaagtgagttgaaagtaaaatgttttatatttcgatacattcacgtaaaagtgaattga 25927376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 2171801 - 2171738
Alignment:
Q  214 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaa 276  Q
    |||||||  |||||||||| | |||||| ||||||||||| || ||||||||||||||||||||    
T  2171801 tcaagttcgaatcaattccgggggcaaagtcaattttactcgagaacatccaaacatgtcaaaa 2171738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 17898085 - 17898144
Alignment:
Q  137 aaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    ||||||||||||||||||| ||||||||||||||| | ||| | ||| |||||| |||||    
T  17898085 aaagtgagttgaatgtaaagtgatttatgtttggatatatttaggtaaaagtgaattgaa 17898144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 25319184 - 25319117
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    |||| |||||||| ||||||||||||| |  ||||||||| || ||||| ||||| ||||||||||||    
T  25319184 tttacttaaaagtaagttgaatgtaaagttttttatgtttcgatacatttacgtaaaagtgagttgaa 25319117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 46382908 - 46382869
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgttt 168  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  46382908 tttagataaaagtaagttgaatgtaaaatgatttatgttt 46382869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 16566366 - 16566328
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||| || |||||||||||||||    
T  16566366 gttaaaagtgagttgaatgtgaattgatttatgtttgga 16566328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 22699803 - 22699765
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  22699803 gttaaaagtaagttgaatgtaaagtgatttatgtttgga 22699765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 22980727 - 22980765
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  22980727 gttaaaagtaagttgaatgtaaagtgatttatgtttgga 22980765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 22994314 - 22994352
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  22994314 gttaaaagtaagttgaatgtaaagtgatttatgtttgga 22994352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 41866219 - 41866177
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||||||||| |||| || |||||||||||||||    
T  41866219 tttagttaaaagtgagttggatgtgaattgatttatgtttgga 41866177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 52062999 - 52063041
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||| || |||||||||||| ||||||||    
T  52062999 tttagttaaaagtgagtttaaggtaaaatgatttctgtttgga 52063041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 14597650 - 14597687
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  14597650 ttaaaagtgagttgaatgaaaagtgatttatgtttgga 14597687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 28947774 - 28947811
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 170  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  28947774 gttaaaagtgagttgaacgtaaagtgatttatgtttgg 28947811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 882820 - 882758
Alignment:
Q  131 tagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagtt 193  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||||||| | | |||||||||    
T  882820 tagttaaaattgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagtt 882758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 1500079 - 1499973
Alignment:
Q  86 tgacataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtaga 185  Q
    ||||| ||||||||||| | |||||||||| |||||| | || ||| | |||||| ||||||| |||||| ||||||||||||| | ||||| | ||| |    
T  1500079 tgacaaaaattgattttgactgaattgattttgtaaaattgattttggctaaaagcgagttgagtgtaaattgatttatgtttgaatacatttatgtaaa 1499980  T
Q  186 agtgagt 192  Q
    |||||||    
T  1499979 agtgagt 1499973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 25208762 - 25208723
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgttt 168  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  25208762 tttaattaaaagtgagttgaatgtaaaatgatttatgttt 25208723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 3525098 - 3524989
Alignment:
Q  92 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgag 191  Q
    ||||| ||||| ||||||||||||||||||| | || | | | ||||||||||||||||| ||| || ||||| |||| | ||||| | ||| |||| ||    
T  3525098 aaattaattttgaatgaattgattatgtaaaattgattgtggctaaaagtgagttgaatgcaaactggtttatatttgaatacatttatgtaaaagtcag 3524999  T
Q  192 ttgaaagata 201  Q
    ||||| ||||    
T  3524998 ttgaacgata 3524989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 8856479 - 8856375
Alignment:
Q  93 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagt 192  Q
    |||||||||| ||  ||||||| |||| || | || |||  ||||||||  |||||| |||||||||||| |||||||| ||||||| ||  ||||||||    
T  8856479 aattgattttgaaaaaattgatcatgtcaaattgaattttattaaaagttggttgaaggtaaaatgatttgtgtttggatacattcatgtgaaagtgagt 8856380  T
Q  193 tgaaa 197  Q
    |||||    
T  8856379 tgaaa 8856375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 9043722 - 9043774
Alignment:
Q  98 atttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaat 150  Q
    |||||||||||||||||| |||| | | || ||||||||||||||||||||||    
T  9043722 atttttaatgaattgattttgtataattgattttagttaaaagtgagttgaat 9043774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 20846463 - 20846423
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttg 169  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  20846463 tttagttaaaaatgagtagaatgtaaaatgatttatgtttg 20846423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 34621010 - 34620954
Alignment:
Q  141 tgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 197  Q
    ||||||||| ||||| ||||||||||||||| ||||| | ||| |||||||||||||    
T  34621010 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaa 34620954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 34748447 - 34748391
Alignment:
Q  141 tgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 197  Q
    ||||||||| ||||| ||||||||||||||| ||||| | ||| |||||||||||||    
T  34748447 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaa 34748391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 434192 - 434254
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 197  Q
    ||||||||||||| | |||||||||||| |||||||| | ||||  ||| |||||||||||||    
T  434192 taaaagtgagttgcaggtaaaatgatttgtgtttggatatattcgtgtaaaagtgagttgaaa 434254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 16442371 - 16442413
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||| ||||||||||||||| || |||||||||||||||    
T  16442371 tttagttacaagtgagttgaatgtgaattgatttatgtttgga 16442413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 16548215 - 16548177
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||| || |||||||||||||||    
T  16548215 gttaaaagtgagttgaatgtgaattgatttatgtttgga 16548177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 7486561 - 7486524
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||| || |||||||||||||||||||||    
T  7486561 ttaaaagtgagtttaaggtaaaatgatttatgtttgga 7486524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 8551118 - 8551175
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacg-tagaagtga 190  Q
    ||||||||||||||| || ||| |||||||||||||||||| || ||| |||||||||    
T  8551118 ttaaaagtgagttgagtgaaaagtgatttatgtttggacacctttacgatagaagtga 8551175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 29759751 - 29759713
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29759751 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 29759713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 47307559 - 47307505
Alignment:
Q  104 aatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatg 158  Q
    |||||||||||| | |||| | |||||||||||||||||||||||||||||||||    
T  47307559 aatgaattgattttataaaattgactttagttaaaagtgagttgaatgtaaaatg 47307505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 13344913 - 13344836
Alignment:
Q  93 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgg 170  Q
    |||||||||| | |||||||||| |||| | | || ||| ||||||||||||||||| ||||| ||||||||||||||    
T  13344913 aattgattttgattgaattgattttgtagaattgattttggttaaaagtgagttgaacgtaaagtgatttatgtttgg 13344836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 34915196 - 34915135
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    ||||||||||||| | ||||||||||||||||||| | ||||||| ||| ||||||||||||    
T  34915196 taaaagtgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgagttgaa 34915135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 35961498 - 35961437
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    ||||||||||||||| ||||||||||||||||||  | ||||||| ||| ||||||||||||    
T  35961498 taaaagtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttgaa 35961437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 4347100 - 4347036
Alignment:
Q  107 gaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||| |||| | | || ||| ||||||||||||||||||||||| |||||||||||||||    
T  4347100 gaattgattttgtagaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttgga 4347036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 7301834 - 7301890
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 190  Q
    |||||||||| |||||||||||||||||||| |||||  ||||||||||| ||||||    
T  7301834 ttaaaagtgatttgaatgtaaaatgatttatatttggtaacattcacgtaaaagtga 7301890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 7335901 - 7335941
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttg 169  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  7335901 tttagttaaaagtgagttgaatgtaaagtgatttatgtttg 7335941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 12655424 - 12655314
Alignment:
Q  85 gtgacataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtag 184  Q
    |||||| |||| ||||||  ||||||||||||||| || | || |||| ||||||| |||||||||||| |||| | ||||||| || | ||||| |||     
T  12655424 gtgacaaaaatagattttagatgaattgattatgtgaaattgattttacttaaaagcgagttgaatgtagaatggtctatgtttagataaattcatgta- 12655326  T
Q  185 aagtgagttgaa 196  Q
    ||||||||||||    
T  12655325 aagtgagttgaa 12655314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 5268349 - 5268287
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 197  Q
    ||||||||||||||||||||| |||||| |||||| | | ||||| ||| |||||||||||||    
T  5268349 taaaagtgagttgaatgtaaagtgatttttgtttgaatatattcatgtaaaagtgagttgaaa 5268287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 44786871 - 44786928
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 190  Q
    ||||||| ||||||||||||||||||||||||||| | | ||||||| ||| ||||||    
T  44786871 gttaaaaatgagttgaatgtaaaatgatttatgttcgaatacattcatgtaaaagtga 44786928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 3887364 - 3887439
Alignment:
Q  95 ttgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||| ||||||||| || |||||| | || ||||| |||| ||||||| ||||||||||| ||||||||||||    
T  3887364 ttgattttgaatgaattggttttgtaaaat-gattttagataaaggtgagttcaatgtaaaatgttttatgtttgga 3887439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 32365183 - 32365143
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttg 169  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  32365183 tttagtcaaaagtgagttgaatgtaaattgatttatgtttg 32365143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 213246 - 213297
Alignment:
Q  145 ttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    ||||||||||| ||||||||||||||| |||| || ||| ||||||||||||    
T  213246 ttgaatgtaaagtgatttatgtttggatacatgcatgtaaaagtgagttgaa 213297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 40643069 - 40642990
Alignment:
Q  93 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggac 172  Q
    |||||||||| | |||||||||| |||||| | || ||| | ||| ||  ||||||||||||| ||||||||||||||||    
T  40643069 aattgattttgagtgaattgattctgtaaaattgattttggataagagcaagttgaatgtaaagtgatttatgtttggac 40642990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 48548975 - 48549030
Alignment:
Q  141 tgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    ||||||||| |||||||||||||||||| || ||||| | ||| ||||||||||||    
T  48548975 tgagttgaaggtaaaatgatttatgttttgatacatttatgtaaaagtgagttgaa 48549030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 1199927 - 1199889
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||| || |||||||||||||||    
T  1199927 gttaaaagtgagttgaatgtgaattgatttatgtttgga 1199889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 20800303 - 20800341
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||| || |||||||||||||||    
T  20800303 gttaaaagtgagttgaatgtgaattgatttatgtttgga 20800341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 33693134 - 33693088
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacattca 179  Q
    |||||||| |||||||| ||||| ||||||||||||||| |||||||    
T  33693134 gttaaaagcgagttgaacgtaaagtgatttatgtttggatacattca 33693088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 35569228 - 35569266
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||| || |||||||||||||||    
T  35569228 gttaaaagtgagttgaatgtgaattgatttatgtttgga 35569266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 40352491 - 40352453
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  40352491 gttaaaagtgagtttaatgtaaagtgatttatgtttgga 40352453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 48511008 - 48510970
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||| || |||||||||||||||    
T  48511008 gttaaaagtgagttgaatgtgaattgatttatgtttgga 48510970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 50751256 - 50751290
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttg 169  Q
    |||||||||||| ||||||||||||||||||||||    
T  50751256 taaaagtgagttaaatgtaaaatgatttatgtttg 50751290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 7524243 - 7524182
Alignment:
Q  135 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    |||||||||| | || ||||| |||||| |||||||||||||| | ||| ||||||||||||    
T  7524243 taaaagtgagctcaaggtaaagtgatttgtgtttggacacatttatgtaaaagtgagttgaa 7524182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 26253024 - 26253101
Alignment:
Q  90 ataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtt 167  Q
    |||||||| |||| |||||||||||| |||||| |||| |    |||||| ||||||||| ||||||| |||||||||    
T  26253024 ataaattggttttgaatgaattgattctgtaaaatcgattcggtttaaaaatgagttgaaagtaaaatcatttatgtt 26253101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 15241 - 15320
Alignment:
Q  92 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||| |  ||||||||| ||| || | || ||| |||||||||||||||||| |||| |||||||||||||||    
T  15241 aaattgattttgatagaattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgtttgga 15320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 29923069 - 29922986
Alignment:
Q  96 tgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattca 179  Q
    ||||||| ||||||||||||||||||| | || |||   || ||||||||||||||| || | ||||||||||||| |||||||    
T  29923069 tgattttgaatgaattgattatgtaaaattgattttgactataagtgagttgaatgtgaagtaatttatgtttggatacattca 29922986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 2483732 - 2483774
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||||||| || |||||||||||||||    
T  2483732 tttagttaaaagtgagttgaatgtgaattgatttatgtttgga 2483774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 2868371 - 2868413
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  2868371 tttagttaaaagtgagttgaatgtaaagtgatttaagtttgga 2868413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 4306636 - 4306598
Alignment:
Q  141 tgagttgaatgtaaaatgatttatgtttggacacattca 179  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  4306636 tgagttgaatgtaaaatgatttatgtttggatacattca 4306598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 22811116 - 22811078
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  22811116 gttaaaagtgagttgaatgtaaagtgatttatgtttgga 22811078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 24036660 - 24036627
Alignment:
Q  136 aaaagtgagttgaatgtaaaatgatttatgtttg 169  Q
    ||||||||||||||||||||||||||||||||||    
T  24036660 aaaagtgagttgaatgtaaaatgatttatgtttg 24036627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 5465398 - 5465458
Alignment:
Q  108 aattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgttt 168  Q
    |||||||| |||||| | || ||||| ||||||||| ||||||| ||||||||||||||||    
T  5465398 aattgattttgtaaaattgattttagataaaagtgaattgaatgaaaaatgatttatgttt 5465458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 6988277 - 6988217
Alignment:
Q  108 aattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgttt 168  Q
    |||||||| |||||| | || |||| |||||||| |||||||| |||||||||||||||||    
T  6988277 aattgattttgtaaaattgattttaattaaaagtaagttgaatttaaaatgatttatgttt 6988217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 10898736 - 10898672
Alignment:
Q  214 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaat 277  Q
    |||||||| |||||||||  |||||||||||||||||||| || | || ||||||||||||||||    
T  10898736 tcaagttagaatcaattctagaggcaaaatcaattttactcgagagcaaccaaacatgtcaaaat 10898672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 10957205 - 10957268
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagtt 193  Q
    ||||||||||||||| |||||||| ||||||||||||||| |  ||||| ||||| |||||||||    
T  10957205 tttagttaaaagtgacttgaatgt-aaatgatttatgttttgttacatttacgtacaagtgagtt 10957268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 28304821 - 28304888
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 196  Q
    ||||||||||| |||||||||||  ||||||||||| |||||| | |||||||||  |||| ||||||    
T  28304821 tttagttaaaaatgagttgaatgggaaatgatttatatttggatatattcacgtaacagtgggttgaa 28304888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 19784903 - 19784865
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  19784903 gttaaaagtgagttgaatgtaaagtggtttatgtttgga 19784865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 22482279 - 22482241
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||||| || |||||||||||||||    
T  22482279 gttaaaagtgagttgaatgtgaattgatttatgtttgga 22482241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 167
Target Start/End: Original strand, 35816985 - 35817019
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtt 167  Q
    ||||||||||||||||||||||||| |||||||||    
T  35816985 gttaaaagtgagttgaatgtaaaataatttatgtt 35817019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 38045460 - 38045390
Alignment:
Q  217 agttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaataaaatttgc 286  Q
    ||||| ||||||| || ||||||||||||||| |||| || ||||| ||||||||||||||| || |||||    
T  38045460 agttaaaatcaataccggaggcaaaatcaattctacttgagaacattcaaacatgtcaaaatcaattttgc 38045390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 10273268 - 10273357
Alignment:
Q  108 aattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 197  Q
    |||||||| |||||| |  | |||| ||| ||||||||||||| |||||||||||||| ||| | |||||  |||| ||||| |||||||    
T  10273268 aattgattttgtaaaattaattttacttataagtgagttgaatataaaatgatttatgcttgaatacattttcgtacaagtgggttgaaa 10273357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 29922640 - 29922575
Alignment:
Q  214 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaata 278  Q
    |||||||| |||||||||  ||||||||||||||| |||| || ||||  ||||||||||||||||    
T  29922640 tcaagttaaaatcaattcttgaggcaaaatcaattctactagagaacaatcaaacatgtcaaaata 29922575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 40885300 - 40885259
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttggacaca 175  Q
    |||||||||||||| |||| || |||||||||||||||||||    
T  40885300 ttaaaagtgagttggatgtgaattgatttatgtttggacaca 40885259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 43152386 - 43152423
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  43152386 ttaaaagtgagttgaatgaaaagtgatttatgtttgga 43152423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 12378 - 12444
Alignment:
Q  214 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaataa 279  Q
    |||||||| ||||| |||  ||||||||||||||| |||| || |||||||||||||||||||||||    
T  12378 tcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataa 12444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 14075 - 14131
Alignment:
Q  141 tgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 197  Q
    ||||||||| ||||| ||||||||||||||| ||||||| ||  |||||||||||||    
T  14075 tgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaa 14131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 99742 - 99701
Alignment:
Q  129 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgg 170  Q
    |||| |||||||||||||||||||||| | ||||||||||||    
T  99742 tttaattaaaagtgagttgaatgtaaattaatttatgtttgg 99701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 199394 - 199431
Alignment:
Q  133 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 170  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  199394 gttaaaagtgagttgaacgtaaagtgatttatgtttgg 199431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 219728 - 219691
Alignment:
Q  134 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 171  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  219728 ttaaaagtgagttgaatgaaaagtgatttatgtttgga 219691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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