View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_low_13 (Length: 424)
Name: NF15317_low_13
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 39933995 - 39934400
Alignment:
| Q |
1 |
tgcaatgtatgtcacaaataatctacatcaagaaactgaatttaggaactagattgagagaaaggtactgaagaaattaatgacaatttatgatttctca |
100 |
Q |
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| T |
39933995 |
tgcaatgtatgtcacaaataatctacatccagaaactgaatttaggaactagattgagagaaaggtactgaagaaattaatgacaatttatgatttctca |
39934094 |
T |
|
| Q |
101 |
tctaagtgaaaatgtgacatcatacatgtatttatagctacatagatgtgtaacagtactctaactaactttctacattggtttactaactgtaactaat |
200 |
Q |
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| T |
39934095 |
tctaagtgacaatgtgacatcatacatgtatttatagctacatagatgtgtaacagtactctaactaactttctacattggtttactaactgtaactaat |
39934194 |
T |
|
| Q |
201 |
tacaacacgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttttcatagaa |
300 |
Q |
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| T |
39934195 |
tacaacacgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttttcatagaa |
39934294 |
T |
|
| Q |
301 |
tgtaggagagaagaacttatcatcattatcacttattccaaccataacaatatcatttatcatcatttcaaatcttcttaaatatcttcatatttgtaag |
400 |
Q |
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| T |
39934295 |
tgtaggagagaagaacgtatcatcattatcacttattccaaccataacaatatcatttatcatcatttcaaatcttcttaaatatcttcatatttgtaag |
39934394 |
T |
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| Q |
401 |
aaatag |
406 |
Q |
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| T |
39934395 |
aaatag |
39934400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 39928648 - 39928688
Alignment:
| Q |
289 |
tttttcatagaatgtaggagagaagaacttatcatcattat |
329 |
Q |
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| T |
39928648 |
tttttcatagaatgtaggagaaaagaacttattaccattat |
39928688 |
T |
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