View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_low_14 (Length: 423)
Name: NF15317_low_14
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 31265481 - 31265888
Alignment:
| Q |
1 |
cctactttgcatattaagaaataaaaaagtccatagttttaagaaataaaaaagcatagatgttactgaaaaggagttttaagaaactacgttgatataa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31265481 |
cctacttcgcatattaagaaataaaaaagtccatagttttaagaaataaaaaagcatagatgttactgaaaaggagttttaagaaactacgttgatataa |
31265580 |
T |
|
| Q |
101 |
aacatagattaaggaattttgaatagctttcatgtcaatcaagtcaacattaaacttttgcttatgatctgaagaaactggcccaacatagacttagtac |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31265581 |
aacatagattaaggaattttgaatagctttcatgtcaatcaagtcaacattaaacttttgcttatgatctgaagaaactggcccaacatagacttagtac |
31265680 |
T |
|
| Q |
201 |
attttgaagaataaatcatttttaaatactaaccaaatactagtttttgaactcgaagagctataacaactaatccaatatgctcaaactcaactcgcat |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31265681 |
attttgaagaataaatcatttttaaatactaaccaaatactagtttttgaactcgaagagctataacaactaatccaatattctcaaactcaactcgcat |
31265780 |
T |
|
| Q |
301 |
tatgttttcgtgaatttattaattatttcaatcaaacctttcactttccacaaaggaaccgaaacccacgtctaagtgtctgtctctatgtcgattaagt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31265781 |
tatgttttcgtgaatttattaattatttcaatcaaacctctcactttccacaaaggaaccgaaacccacgtctaagtgtctgtctctatgtcgattaagt |
31265880 |
T |
|
| Q |
401 |
gttccaac |
408 |
Q |
| |
|
|||||||| |
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|
| T |
31265881 |
gttccaac |
31265888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 31254034 - 31254246
Alignment:
| Q |
25 |
aaaagtccatagttttaagaaataaaaaagcatagatgttactgaaaaggagttttaagaaactacgttgatataaaacatagattaaggaattttgaat |
124 |
Q |
| |
|
||||||| ||||||| ||||||||||||| |||| |||||||||| ||| |||| |||| || ||||||||| || ||| | | | ||||||||||| |
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|
| T |
31254034 |
aaaagtctatagtttcaagaaataaaaaattgaagatattactgaaaaagagctttacgaaattatgttgatatagaaaatacaatgaagaattttgaat |
31254133 |
T |
|
| Q |
125 |
-agctttcatgtcaatcaagtcaacattaaacttttgcttatgatctgaagaaactggcccaacatagacttagtacattttgaagaataaatcattttt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| || || |||||| ||||||||||| ||||| |||| || || | |||| |
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| T |
31254134 |
tagctttcatgtcaatcaagtcaacattaaagttttgcttatgatcacaaaaacgcagcccaatatagacttagtgcatttaaaagagtatataactttt |
31254233 |
T |
|
| Q |
224 |
aaatactaaccaa |
236 |
Q |
| |
|
|| |||||||||| |
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|
| T |
31254234 |
aagtactaaccaa |
31254246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 31237418 - 31237565
Alignment:
| Q |
27 |
aagtccatagttttaagaaataaaaaagcatagatgttactgaaaaggagttttaagaaactacgttgatataaaacatagat----taaggaattttga |
122 |
Q |
| |
|
||||| ||||||| |||||||| |||| | |||| |||||||||| ||| ||||||||| ||||||| |||| || |||||| ||| ||||||||| |
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|
| T |
31237418 |
aagtctatagtttcaagaaatacaaaattaaagatattactgaaaaagagctttaagaaattacgttggtatagaaaatagatacaataaagaattttga |
31237517 |
T |
|
| Q |
123 |
at-agctttcatgtcaatcaagtcaacattaaacttttgcttatgatc |
169 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||| |||||||| ||||| |
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|
| T |
31237518 |
attagctttcatgtcaattaagtcaacattaaagttttgcttttgatc |
31237565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 408
Target Start/End: Original strand, 31237704 - 31237795
Alignment:
| Q |
316 |
ttattaattatttcaatcaaacctttcactttccacaaaggaaccgaaacccacgtctaagtgtctgtctctatgtcgattaagtgttccaac |
408 |
Q |
| |
|
|||||| |||||||||||||| | |||||||| |||| |||||| | |||| ||| ||| ||||| ||||| || ||||||||||||||||| |
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|
| T |
31237704 |
ttattagttatttcaatcaaaacattcactttacacacaggaactgggacccgcgtttaattgtctatctctctg-cgattaagtgttccaac |
31237795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 401
Target Start/End: Original strand, 31254318 - 31254403
Alignment:
| Q |
316 |
ttattaattatttcaatcaaacctttcactttccacaaaggaaccgaaacccacgtctaagtgtctgtctctatgtcgattaagtg |
401 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||| | |||||| | |||||||| ||||||||| ||||| || | |||||||| |
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|
| T |
31254318 |
ttattagctatttcaatcaaaactttcactttccgtacaggaactgggacccacgtttaagtgtctatctctctgccaattaagtg |
31254403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 14732622 - 14732817
Alignment:
| Q |
20 |
aataaaaaagtccatagttttaagaaataaaaaagcatagatgttactgaaaaggagttttaagaaactacgttgatat-aaaacatagattaaggaatt |
118 |
Q |
| |
|
|||| ||||||| |||||||||||||||| ||||| | |||| |||||||||| ||| ||||||||| || |||||||| |||| ||| ||||| ||||| |
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|
| T |
14732622 |
aatacaaaagtctatagttttaagaaatacaaaagtaaagatattactgaaaaagagctttaagaaattatgttgatatcaaaaaatacattaaagaatt |
14732721 |
T |
|
| Q |
119 |
ttgaat-agctttcatgtcaatcaagtcaacattaaacttttgcttatgatctgaagaaactggcccaacatagacttagtacattttgaagaata |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||| || || |||||||| ||||||||||| ||||| ||||||| |
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|
| T |
14732722 |
ttgaattagctttcatgtcaatcaagtcaacattaaagctttgcttatgatctcaaaaacatggcccaatatagacttagtgcatttaaaagaata |
14732817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 14733126 - 14733190
Alignment:
| Q |
323 |
ttatttcaatcaaacctttcactttccacaaaggaaccgaaacccacgtctaagtgtctgtctct |
387 |
Q |
| |
|
||||||||||||||||| ||||||| |||| |||||| |||||||| ||||||||| ||||| |
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|
| T |
14733126 |
ttatttcaatcaaacctctcacttttcacacaggaactacgacccacgtttaagtgtctatctct |
14733190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 16133096 - 16132880
Alignment:
| Q |
25 |
aaaagtccatagttttaagaaataaaaaagcatagatgttactgaaaaggagttttaagaaactacgttgatataaaaca-tagattaaggaattttgaa |
123 |
Q |
| |
|
||||||| ||||||| |||||||||||||| | |||| |||| ||| | ||| ||| ||||| || |||||||||||||| || | ||| |||||||||| |
|
|
| T |
16133096 |
aaaagtctatagtttcaagaaataaaaaagtaaagatattaccgaacaagagctttgagaaattatgttgatataaaacaatacagtaaagaattttgaa |
16132997 |
T |
|
| Q |
124 |
t-agctttcatgtcaatcaagtcaacattaaacttttgcttatgatctgaagaaactggcccaacatagacttagtacattttgaagaataaatcatttt |
222 |
Q |
| |
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| |||||||||||||||||||||||||||||| |||| | |||||||| || || ||| ||| ||||||||||| ||||| ||||||| || | ||| |
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|
| T |
16132996 |
ttagctttcatgtcaatcaagtcaacattaaagtttttcatatgatctcaaaaacacggcacaatatagacttagtgcatttaaaagaatacataacttt |
16132897 |
T |
|
| Q |
223 |
taaatactaaccaaata |
239 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
16132896 |
tatgtactaaccaaata |
16132880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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