View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15317_low_15 (Length: 423)

Name: NF15317_low_15
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15317_low_15
NF15317_low_15
[»] chr8 (11 HSPs)
chr8 (64-414)||(456212-456547)
chr8 (60-414)||(1636010-1636351)
chr8 (60-414)||(26616572-26616911)
chr8 (202-296)||(44145821-44145915)
chr8 (52-129)||(45093630-45093707)
chr8 (57-129)||(33373387-33373458)
chr8 (318-407)||(38560709-38560798)
chr8 (212-295)||(38560616-38560699)
chr8 (57-141)||(35808379-35808464)
chr8 (84-129)||(42000464-42000509)
chr8 (318-407)||(44145724-44145812)
[»] chr3 (13 HSPs)
chr3 (60-414)||(54346747-54347088)
chr3 (80-414)||(27156033-27156354)
chr3 (96-282)||(43813078-43813263)
chr3 (318-407)||(46428575-46428664)
chr3 (333-407)||(43912358-43912432)
chr3 (318-407)||(42794505-42794594)
chr3 (318-407)||(54812339-54812428)
chr3 (212-296)||(42794603-42794687)
chr3 (55-121)||(36275954-36276018)
chr3 (323-385)||(43812988-43813050)
chr3 (202-296)||(54812236-54812330)
chr3 (52-141)||(46428828-46428916)
chr3 (212-296)||(46428673-46428757)
[»] chr4 (10 HSPs)
chr4 (60-414)||(34389651-34389992)
chr4 (84-414)||(36894286-36894603)
chr4 (318-407)||(47597681-47597770)
chr4 (52-127)||(44307715-44307790)
chr4 (80-176)||(861238-861334)
chr4 (202-293)||(4228291-4228382)
chr4 (75-129)||(1217348-1217402)
chr4 (318-407)||(43270881-43270970)
chr4 (352-408)||(1369357-1369413)
chr4 (352-408)||(28945496-28945552)
[»] chr2 (12 HSPs)
chr2 (60-414)||(13186900-13187240)
chr2 (60-315)||(40426013-40426268)
chr2 (52-315)||(6599017-6599281)
chr2 (163-414)||(7305029-7305267)
chr2 (80-414)||(40190285-40190606)
chr2 (97-377)||(37307177-37307444)
chr2 (60-124)||(7304964-7305027)
chr2 (318-407)||(17290048-17290137)
chr2 (52-125)||(24126256-24126329)
chr2 (333-410)||(26381377-26381454)
chr2 (212-296)||(17290146-17290230)
chr2 (352-408)||(42865840-42865896)
[»] chr1 (13 HSPs)
chr1 (67-414)||(23949710-23950044)
chr1 (60-414)||(5308654-5308995)
chr1 (60-409)||(23084758-23085092)
chr1 (60-377)||(42677240-42677544)
chr1 (60-414)||(50952411-50952754)
chr1 (60-410)||(34553719-34554055)
chr1 (318-407)||(22065292-22065381)
chr1 (75-129)||(6294205-6294259)
chr1 (75-129)||(38168202-38168256)
chr1 (52-122)||(39476256-39476326)
chr1 (60-129)||(22065048-22065116)
chr1 (352-408)||(6293939-6293995)
chr1 (212-292)||(22065199-22065279)
[»] chr7 (7 HSPs)
chr7 (60-414)||(8019591-8019931)
chr7 (60-414)||(48618946-48619287)
chr7 (52-405)||(29213567-29213907)
chr7 (202-407)||(24473467-24473659)
chr7 (202-296)||(24468617-24468711)
chr7 (53-127)||(5791302-5791376)
chr7 (352-408)||(46045830-46045886)
[»] chr5 (10 HSPs)
chr5 (60-414)||(18258985-18259326)
chr5 (52-414)||(22540222-22540571)
chr5 (80-414)||(34080607-34080925)
chr5 (202-407)||(4560304-4560496)
chr5 (84-152)||(13236721-13236789)
chr5 (318-407)||(18883400-18883489)
chr5 (202-296)||(18934170-18934264)
chr5 (318-407)||(18934072-18934161)
chr5 (80-144)||(7531127-7531191)
chr5 (352-408)||(14024858-14024914)
[»] chr6 (3 HSPs)
chr6 (318-407)||(1223053-1223142)
chr6 (60-129)||(1222827-1222895)
chr6 (101-146)||(20679026-20679071)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 64 - 414
Target Start/End: Original strand, 456212 - 456547
Alignment:
Q  64 ggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctcatta 163  Q
    ||||||||||||||  |||| ||| ||| ||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  456212 ggcaaagcccaaaa--aaaccaaactaaaaagataatcaaacattcataggcatgcaagtcccggataaataatcaaaaaggattctttggaccttatta 456309  T
Q  164 ggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttga 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  456310 ggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagccaattagcactcctatttccttcgcgtcaagtatggttga 456409  T
Q  264 gttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaa 363  Q
    ||||||||||||||||||| ||||| |||||||| |||             |||||||||||||||||||||||||||||||||||||||||||||||||    
T  456410 gttgaacattccaactcatcttcagtagcttccggatc-------------cggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaa 456496  T
Q  364 tcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 414  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  456497 tcatatcaatcaaactctttgaatcactttccactataagatgagagtaat 456547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 60 - 414
Target Start/End: Complemental strand, 1636351 - 1636010
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctc 159  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||| |||||||| |||||||| || |||    
T  1636351 agaggacaaagcccaaaagaaaacaaaattaaaaagttaatcgaacatttctaggcatgcaagtcccagataaatcatcaaaaatgattcttttgatctc 1636252  T
Q  160 attaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatgg 259  Q
    |  ||||||| |||||||||| | ||||| ||| ||||  ||||||||| ||||||||||||| |||| |||||||||||||||||| ||  ||||||||    
T  1636251 aaaaggaggagactccagcacaagaaaattaaaatgatctgtagaaatgattaaattagcgagccaatcagcactcctatttccttcacgctaagtatgg 1636152  T
Q  260 ttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatca 359  Q
     |||||||||||||||||||||| |||||||||||||| ||             ||||| || |||||||||||||||||||||||||||||||||||||    
T  1636151 gtgagttgaacattccaactcatcttcagcagcttccggat-------------acggtaaactaaaacaggaatattcccattgaacttgaaattatca 1636065  T
Q  360 gaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 414  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  1636064 gaaatcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 1636010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 60 - 414
Target Start/End: Original strand, 26616572 - 26616911
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctc 159  Q
    |||||||||| |||||||  ||| |||||||||||| |||||||||||| ||||||||||||||  ||||||||| |||||||| |||||||| ||| ||    
T  26616572 agagggcaaaacccaaaaaaaaataaaattaagaagctaatcgaacatttctaggcatgcaagcttcggataaatcatcaaaaatgattcttttgacatc 26616671  T
Q  160 attaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatgg 259  Q
    |  ||||||| |||||| ||||| ||||| ||| ||||  ||||||||| ||||||||| ||| |||| || |||| |||||||||| || |||||||||    
T  26616672 acaaggaggagactccaacactagaaaattaaaatgatctgtagaaatgcttaaattagtgagccaatcagtactcatatttccttcacgccaagtatgg 26616771  T
Q  260 ttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatca 359  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||| || |               ||||||||||||||||||||||||||||||||||    
T  26616772 ttgagttgaacattccaactcatcttcagcagcttccagatccggtaaact---------------aacaggaatattcccattgaacttgaaattatca 26616856  T
Q  360 gaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 414  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  26616857 gaaatcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 26616911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 44145915 - 44145821
Alignment:
Q  202 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 296  Q
    ||||||| | |||||||| ||||||| |||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||    
T  44145915 agaaatgctaaaattagcaagtcaatcagcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 44145821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 45093707 - 45093630
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccgga 129  Q
    |||| ||||||||||||||||||||   ||| |||| |||||| |||| || || |||||||||||||||||||||||    
T  45093707 ggtacaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccgga 45093630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 33373458 - 33373387
Alignment:
Q  57 aaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccgga 129  Q
    |||||||||||||||||||| ||||| |||| |||||| |||| || || ||||||||||||||||| |||||    
T  33373458 aaaagagggcaaagcccaaa-ggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagctccgga 33373387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 38560709 - 38560798
Alignment:
Q  318 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 407  Q
    |||| ||||| ||| ||||||||||| || |||||  |||||||||||| ||| |||||  |||| ||  ||||||||||||||||||||    
T  38560709 tgaactaaaatagggatattcccattaaatttgaacctatcagaaatcacgtcgatcaatatcttcgagccactttccactataagatga 38560798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 38560616 - 38560699
Alignment:
Q  212 aaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttc 295  Q
    |||||||| || ||||  ||||| |||||||||||| | ||||||||||||| ||| |||| ||||  |||| |||||||||||    
T  38560616 aaattagcaagccaatcggcacttctatttccttcgtgccaagtatggttgatttgcacatgccaatccattctcagcagcttc 38560699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 35808464 - 35808379
Alignment:
Q  57 aaaagaggg-caaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaa 141  Q
    ||||||||| |||| ||||||  |||| |||| |||||| ||||  | || ||||||||||||||||||||||| | |||||||||    
T  35808464 aaaagagggtcaaaacccaaagagaaagaaaactaagaaattaaaaggacgttcctaggcatgcaagccccggaaatataatcaaa 35808379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 42000509 - 42000464
Alignment:
Q  84 aaaattaagaagttaatcgaacattcctaggcatgcaagccccgga 129  Q
    |||| |||||| |||| |||||||||||| ||||||||||||||||    
T  42000509 aaaactaagaaattaaacgaacattcctatgcatgcaagccccgga 42000464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 44145812 - 44145724
Alignment:
Q  318 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 407  Q
    |||| ||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  44145812 tgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac-ataagatga 44145724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 60 - 414
Target Start/End: Complemental strand, 54347088 - 54346747
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctc 159  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  54347088 agagggcaaagcccaaaaaaaaacaaaattaagaagttaatcgaacattcctaggcatgtaagccccggataaatcatcaaaaaggattcttttgacctc 54346989  T
Q  160 attaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatgg 259  Q
    |  ||||||| |||||||||| | ||||| ||| ||||  ||||||||| ||||||||||||| |||| |||||||||||||||||| || |||||||||    
T  54346988 acaaggaggagactccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgg 54346889  T
Q  260 ttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatca 359  Q
     |||||||||||||||||||||| |||||||||||||| ||             ||||| || ||||||||||||||| |||||||||||||||||||||    
T  54346888 gtgagttgaacattccaactcatcttcagcagcttccggat-------------acggtaaactaaaacaggaatatttccattgaacttgaaattatca 54346802  T
Q  360 gaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 414  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  54346801 gaaatcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 54346747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 80 - 414
Target Start/End: Original strand, 27156033 - 27156354
Alignment:
Q  80 aaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagca 179  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| || |||||||||||||| |||||||  ||||||| |||||| ||    
T  27156033 aaacaaacttaagaagttaatcgaacgttcctaggcatgcaagctccggataaatcattaaaaaggattcttttgacctcacaaggaggagactccaaca 27156132  T
Q  180 ctaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaact 279  Q
    ||| ||||| ||| ||||  ||||||||| | ||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||||||||||||    
T  27156133 ctagaaaattaaaatgatctgtagaaatgctgaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagttgaacattccaact 27156232  T
Q  280 cattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaact 379  Q
    ||| |||||||||||||| |||||||      ||||       ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |    
T  27156233 catcttcagcagcttccggatccggt------aaac-------taaaacaggaatattcccattaaacttgaaattatcagaaatcatgtcgatcaaaat 27156319  T
Q  380 ctttgaatcactttccactataagatgagaataat 414  Q
    |||||||||||||||||||||||||||||| ||||    
T  27156320 ctttgaatcactttccactataagatgagagtaat 27156354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 96 - 282
Target Start/End: Complemental strand, 43813263 - 43813078
Alignment:
Q  96 ttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtg 195  Q
    |||||||||||||||||||||| ||| |  ||||||||| |||||||| || |  |||||||||| |||||||| ||| || ||  || |||| |||  |    
T  43813263 ttaatcgaacattcctaggcatacaaactacggataaatcatcaaaaatgagttattggacctcactaggaggagacttcaacaacaacaaattaaac-g 43813165  T
Q  196 atacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcat 282  Q
    ||   |||||||| |||| ||||||||||||| |||||||| ||||||||| || ||| ||||||||||||||||||| ||||||||    
T  43813164 atctatagaaatgcttaagttagcgagtcaatcagcactccaatttccttcacgccaattatggttgagttgaacatttcaactcat 43813078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 46428664 - 46428575
Alignment:
Q  318 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 407  Q
    |||| ||||| ||| ||||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  46428664 tgaactaaaataggcatattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 46428575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 407
Target Start/End: Original strand, 43912358 - 43912432
Alignment:
Q  333 atattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 407  Q
    ||||||||||| |||||||| || |||||||||||||  |||||  ||||||| |||||||| ||||||||||||    
T  43912358 atattcccattaaacttgaacttctcagaaatcatgttgatcaatatctttgagtcactttcaactataagatga 43912432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 42794594 - 42794505
Alignment:
Q  318 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 407  Q
    |||| ||||| ||| ||||||||||| |||||||| || | |||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  42794594 tgaactaaaataggcatattcccattaaacttgaacttgttagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 42794505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 54812339 - 54812428
Alignment:
Q  318 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 407  Q
    |||| ||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  54812339 tgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 54812428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 42794687 - 42794603
Alignment:
Q  212 aaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 296  Q
    |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||    
T  42794687 aaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 42794603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 36276018 - 36275954
Alignment:
Q  55 ataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaa 121  Q
    |||||||| |||||||||||||  |||| ||||||| ||| |||| |||||||||||| ||||||||    
T  36276018 ataaaagaaggcaaagcccaaa--gaaaaaaaattatgaaattaaacgaacattcctaagcatgcaa 36275954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 43813050 - 43812988
Alignment:
Q  323 taaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttga 385  Q
    ||||||| ||||||| |||||  | |||||||||||||||||||| || |||||| |||||||    
T  43813050 taaaacatgaatattgccattacatttgaaattatcagaaatcatatcgatcaaaatctttga 43812988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 54812236 - 54812330
Alignment:
Q  202 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 296  Q
    ||||||| | |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| | ||  |||| ||||||||||||    
T  54812236 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgctaatccattctcagcagcttcc 54812330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 46428916 - 46428828
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaa 141  Q
    |||| ||||||||||||||||||| || ||| ||| | | ||| |||| || ||||||||||||||||||||| |||| | || ||||||    
T  46428916 ggtacaaaagagggcaaagcccaagagaaaagaaact-acgaaattaaacggacattcctaggcatgcaagcctcggaaatatcatcaaa 46428828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 46428757 - 46428673
Alignment:
Q  212 aaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 296  Q
    |||||||| || ||||  ||||| |||||||||||  | ||||||||||||| ||| |||| ||||  |||| ||||||||||||    
T  46428757 aaattagcaagccaatcggcacttctatttccttcatgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 46428673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 60 - 414
Target Start/End: Original strand, 34389651 - 34389992
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctc 159  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  34389651 agagggcaaagcccaaaagaaaacaaaattaagaagctaatcgaacattcctaggcatgtaagccccggataaatcatcaaaaaggattcttttgacctc 34389750  T
Q  160 attaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatgg 259  Q
    |  ||||||| |||||| ||||||||||| ||| ||||| ||| ||||| ||||||||||||| |||| |||||||||||||||||| ||  ||||||||    
T  34389751 acaaggaggagactccaacactaaaaaattaaaatgatatgtaaaaatgcttaaattagcgagccaatcagcactcctatttccttcacgctaagtatgg 34389850  T
Q  260 ttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatca 359  Q
    |||||||||||||||||| |||| ||||||||||| || |||||||      ||||       ||||||| |||||||||||||||||||||||||||||    
T  34389851 ttgagttgaacattccaaatcatcttcagcagctttcggatccggt------aaac-------taaaacaagaatattcccattgaacttgaaattatca 34389937  T
Q  360 gaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 414  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  34389938 gaaatcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 34389992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 84 - 414
Target Start/End: Original strand, 36894286 - 36894603
Alignment:
Q  84 aaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaa 183  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||  ||||||| |||||| |||||     
T  36894286 aaaattaagaagctaatcgaacattcctaggcatgcaagctccggataaatcatcaaaaaggattcttttgacctcacaaggaggagactccaacactag 36894385  T
Q  184 aaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcatt 283  Q
    ||||| ||| ||||  ||| ||||| ||||||||||||| |||| | |||||||||||||||| || ||||||||||||||||||||||||||||||||     
T  36894386 aaaattaaaatgatctgtataaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggttgagttgaacattccaactcatc 36894485  T
Q  284 ttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactcttt 383  Q
    ||||||| |||||| |||||||      ||||       |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| |||||    
T  36894486 ttcagcaacttccggatccggt------aaac-------taaaacaggaatattcacattgaacttgaaattattagaaatcatgtcgatcaaaatcttt 36894572  T
Q  384 gaatcactttccactataagatgagaataat 414  Q
    |||||||||||||||||||||||||| ||||    
T  36894573 gaatcactttccactataagatgagagtaat 36894603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 47597681 - 47597770
Alignment:
Q  318 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 407  Q
    |||| ||||| ||| ||||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  47597681 tgaactaaaataggcatattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 47597770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 44307790 - 44307715
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccg 127  Q
    |||| ||||||||||||||| ||||   ||| |||| |||||| |||| ||||| |||||||||||||||||||||    
T  44307790 ggtacaaaagagggcaaagcacaaagaaaaagaaaactaagaaattaaacgaacgttcctaggcatgcaagccccg 44307715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 861334 - 861238
Alignment:
Q  80 aaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactcca 176  Q
    |||||||| ||||||||||  |||||| | |||| ||||||||||||||| | || ||||||||| |  ||| |||  |||||||||||| ||||||    
T  861334 aaacaaaactaagaagttagccgaacacttctagacatgcaagccccggaaatatcatcaaaaagtaagcttcggaggtcattaggaggagactcca 861238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 293
Target Start/End: Complemental strand, 4228382 - 4228291
Alignment:
Q  202 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagct 293  Q
    ||||||| | |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| |||||||||    
T  4228382 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagct 4228291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 1217402 - 1217348
Alignment:
Q  75 aaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccgga 129  Q
    |||||||| |||| |||||| |||| || || |||||||||||||||||||||||    
T  1217402 aaaggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccgga 1217348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 43270881 - 43270970
Alignment:
Q  318 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 407  Q
    |||| ||||| ||| ||||| ||||| | ||||||||| ||| |||||||||| |||||  |||| || |||||||  ||||||||||||    
T  43270881 tgaactaaaatagggatatttccattaagcttgaaattgtcaaaaatcatgtcgatcaatatcttagagtcacttttaactataagatga 43270970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 1369413 - 1369357
Alignment:
Q  352 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 408  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  1369413 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 1369357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 408
Target Start/End: Original strand, 28945496 - 28945552
Alignment:
Q  352 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 408  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  28945496 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 28945552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 60 - 414
Target Start/End: Complemental strand, 13187240 - 13186900
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctc 159  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||    
T  13187240 agagggcaaagcccaaaagaaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccgaataaatcatcaaaaaggattcttt-gacctc 13187142  T
Q  160 attaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatgg 259  Q
    |  ||||||| |||||| ||| | ||||| ||| ||||| ||||||||| ||||||||||||| |||| |||||||||||||||||| || ||||||||     
T  13187141 acaaggaggagactccaacacaataaaattaaaatgatatgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatga 13187042  T
Q  260 ttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatca 359  Q
    ||||||||||||||||||||| | |||||||||||||| ||             ||||| || ||||||||||||||| |||||||||||||||||||||    
T  13187041 ttgagttgaacattccaactcgtcttcagcagcttccggat-------------acggtaaactaaaacaggaatatttccattgaacttgaaattatca 13186955  T
Q  360 gaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 414  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  13186954 gaaatcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 13186900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 60 - 315
Target Start/End: Original strand, 40426013 - 40426268
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctc 159  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  40426013 agagggcaaagcccaaaagaaaacaagattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaagattcttttgacctc 40426112  T
Q  160 attaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatgg 259  Q
    |  ||||||| |||||||||| | ||||| ||| ||||  ||||||||| |||||||||||||||||| |||||||||||||||||| |  ||| |||||    
T  40426113 acaaggaggagactccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagtcaatcagcactcctatttccttcacaccaaatatgg 40426212  T
Q  260 ttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaac 315  Q
     |||||||||||||||||||||| |||||||||||||| || |||| || ||||||    
T  40426213 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaac 40426268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 52 - 315
Target Start/End: Complemental strand, 6599281 - 6599017
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaaca-aaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattct 150  Q
    |||| |||||| ||||||||||||||  ||| | ||| ||| ||| ||| ||||||||| |||||||||||||||||||||||| ||||||||| ||| |    
T  6599281 ggtacaaaagatggcaaagcccaaaaaaaaaaacaaactaaaaagctaaacgaacattcttaggcatgcaagccccggataaatcatcaaaaagtatttt 6599182  T
Q  151 ttggacctcattaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgt 250  Q
    |||||||||| |||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||| |||||||||| ||     
T  6599181 ttggacctcactaggaggagactccaacactaaaaaatcaaagtgatatgtagaaatgcttaaattagcgagccaatcagcactcttatttccttcacgc 6599082  T
Q  251 caagtatggttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaac 315  Q
    ||| ||||||||||||||||||||||| |||| ||||||| |||||| |||||||||| ||||||    
T  6599081 caattatggttgagttgaacattccaattcatcttcagcaacttccggatccggtgaactaaaac 6599017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 163 - 414
Target Start/End: Original strand, 7305029 - 7305267
Alignment:
Q  163 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 262  Q
    ||||||| |||||| ||||| ||||| ||||||||  ||||||||| ||||||||| ||| |||| |||||||||||||||||| || ||||||||||||    
T  7305029 aggaggagactccaacactagaaaattaaagtgatctgtagaaatgcttaaattagagagccaatcagcactcctatttccttcacgccaagtatggttg 7305128  T
Q  263 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 362  Q
    ||||||| |||||||||||| |||||||| ||||| |||             |||| || |||||||||||||||| |||||||||||||||||| ||||    
T  7305129 agttgaaaattccaactcatcttcagcaggttccggatc-------------cggtaaagtaaaacaggaatattctcattgaacttgaaattattagaa 7305215  T
Q  363 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 414  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  7305216 atcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 7305267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 80 - 414
Target Start/End: Original strand, 40190285 - 40190606
Alignment:
Q  80 aaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagca 179  Q
    |||||||||||| ||| ||||||||||||| ||| |||||||| | ||||||||| || ||||||||||||| ||| |||| |||||||| | |||| ||    
T  40190285 aaacaaaattaaaaagctaatcgaacattcttagacatgcaagtctcggataaatcattaaaaaggattcttcggatctcactaggaggagattccaaca 40190384  T
Q  180 ctaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaact 279  Q
    |||  |||| |||||||| |||| ||||| |||| |||| ||||||||   ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  40190385 ctagtaaattaaagtgatccgtataaatgcttaagttagtgagtcaatctacactcctatttccttcatgtcaagtatggttgagttgaacattccaact 40190484  T
Q  280 cattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaact 379  Q
    ||| |||||||| ||  | |||              |||| | ||||| ||||||||   |||||||||| ||||||||||||||||| || |||||| |    
T  40190485 catcttcagcagttttgggatc-------------tggtggactaaaataggaatatgttcattgaacttaaaattatcagaaatcatatcgatcaaaat 40190571  T
Q  380 ctttgaatcactttccactataagatgagaataat 414  Q
    |||||||||||||||||||||||||||||| ||||    
T  40190572 ctttgaatcactttccactataagatgagagtaat 40190606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 97 - 377
Target Start/End: Original strand, 37307177 - 37307444
Alignment:
Q  97 taatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagcactaaaaaatcaaagtga 196  Q
    |||||||| ||||||||||||||||| || |||||||| ||| ||||||||||||||||||||  ||| |||| |||||| || ||  |||| |||||||    
T  37307177 taatcgaagattcctaggcatgcaagtcctggataaatcatctaaaaggattctttggacctcgctagaaggagactccaacattagtaaattaaagtga 37307276  T
Q  197 tacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 296  Q
    | |||||||||| |||| ||| |||| |||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||| ||| |    
T  37307277 tccgtagaaatgcttaagttaacgagccaatcagcactcctatttccttcacgtcaagtatggttgagttgaacatttcaactcatcttcggcaactttc 37307376  T
Q  297 gaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaa 377  Q
      |||||||      ||||       |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  37307377 agatccggt------aaac-------taaaacaggaatattctcattgaacttgaaattatcagaaatcatgtcgatcaaa 37307444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 7304964 - 7305027
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagcc 124  Q
    ||||||||||||||||||  |||||||| ||||||| ||||||||||||| ||||||||||||||    
T  7304964 agagggcaaagcccaaaaa-aaacaaaactaagaagctaatcgaacattcttaggcatgcaagcc 7305027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 17290137 - 17290048
Alignment:
Q  318 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 407  Q
    |||| ||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  17290137 tgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 17290048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 24126256 - 24126329
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccc 125  Q
    |||| ||||||||||||||||||||   ||| |||| |||||| |||| || |  |||||||||||||||||||    
T  24126256 ggtacaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggaagttcctaggcatgcaagccc 24126329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 410
Target Start/End: Original strand, 26381377 - 26381454
Alignment:
Q  333 atattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaa 410  Q
    |||||||| ||||| |  ||||| ||||||||||||||||||||| |||||||  | || |||||| | |||||||||    
T  26381377 atattcccgttgaaatgaaaattgtcagaaatcatgtcaatcaaaatctttgagccgctctccacttttagatgagaa 26381454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 17290230 - 17290146
Alignment:
Q  212 aaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 296  Q
    |||||||| || ||||  ||||| ||||||||||| || ||| ||||||||| ||| |||| ||||  |||| ||||||||||||    
T  17290230 aaattagcaagccaatcggcacttctatttccttcacgccaaatatggttgatttgcacatgccaatccattctcagcagcttcc 17290146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 42865896 - 42865840
Alignment:
Q  352 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 408  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  42865896 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 42865840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 67 - 414
Target Start/End: Complemental strand, 23950044 - 23949710
Alignment:
Q  67 aaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctcattagga 166  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| |||||||  ||||    
T  23950044 aaagcccaaaagaaaacaaaattaagaagttaatcgaacattcctaggcatgcaaaccccggataaatcatcaaaaatgattcttttgacctcacaagga 23949945  T
Q  167 ggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagtt 266  Q
    ||| |||||| ||| | ||||| ||| ||||  ||||||||| ||||||||||||| |||| |||||||||||||||||| || ||||||||||||||||    
T  23949944 ggagactccaacacaataaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagtt 23949845  T
Q  267 gaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatca 366  Q
    |||||||| ||||||| |||||||||||||| ||             ||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  23949844 gaacattctaactcatcttcagcagcttccggat-------------acggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatca 23949758  T
Q  367 tgtcaatcaaactctttgaatcactttccactataagatgagaataat 414  Q
    |||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  23949757 tgtcgatcaaaatctttgaatcactttccactataagatgagattaat 23949710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 60 - 414
Target Start/End: Complemental strand, 5308995 - 5308654
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctc 159  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||||| ||||||    
T  5308995 agagggcaaagcccaaaagtaaacaaaattaagaagttaatcgaacattcctaggcatgcaagtcctggataaatcatcaaaaatgattcttttgacctc 5308896  T
Q  160 attaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatgg 259  Q
    |  ||||||| |||||| ||| | ||||| ||| ||||| ||||||||| ||||||||||||| |||| |||||||||||||||||| || |||||||||    
T  5308895 acaaggaggagactccaacacaagaaaattaaaatgatatgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgg 5308796  T
Q  260 ttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatca 359  Q
    ||||||||||||||||||||||| |||||||| ||||| ||             ||||| || ||||||||||||||| |||||||||||||||||||||    
T  5308795 ttgagttgaacattccaactcatcttcagcagattccggat-------------acggtaaactaaaacaggaatatttccattgaacttgaaattatca 5308709  T
Q  360 gaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 414  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||||||||| ||||    
T  5308708 gaaatcatgtcgatcaaaatctttgattcactttccactataagatgagagtaat 5308654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 60 - 409
Target Start/End: Original strand, 23084758 - 23085092
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctc 159  Q
    ||||||||||||||||||  ||| ||||||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||| |||| ||| ||||||    
T  23084758 agagggcaaagcccaaaa--aaataaaattaaggagttaatcgaacattcctaggtatgcaagctccggataaatcatcaaaaatgattattttgacctc 23084855  T
Q  160 attaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatgg 259  Q
    |  ||||||| |||||| ||||| ||||| ||| ||||||||||||||| ||||||||||||| |||| |||||||||||||||||| || ||| |||||    
T  23084856 acaaggaggagactccaacactagaaaattaaaatgatacgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaaatatgg 23084955  T
Q  260 ttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatca 359  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||      ||||       ||||||| |||||||||||||||||||||||||||||    
T  23084956 ttgagttgaacattccaactcatcttcagcagcttccggatccggt------aaac-------taaaacatgaatattcccattgaacttgaaattatca 23085042  T
Q  360 gaaatcatgtcaatcaaactctttgaatcactttccactataagatgaga 409  Q
     |||||||||| |||||| ||||| |||||||||||||||||||||||||    
T  23085043 aaaatcatgtcgatcaaaatctttaaatcactttccactataagatgaga 23085092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 60 - 377
Target Start/End: Complemental strand, 42677544 - 42677240
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctc 159  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  42677544 agagggcaaagcccaaaagaaaacaaaattaagaagttaatcgaatattcctaggcatgcaagccccagataaatcatcaaaaaggattcttttgacctc 42677445  T
Q  160 attaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatgg 259  Q
    |  ||||||| |||||| ||||| ||||| |||  |||  ||||||||| ||||||||||||| |||| |||||||||||||||||| || |||||||||    
T  42677444 acaaggaggagactccaacactagaaaattaaaaagatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgg 42677345  T
Q  260 ttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatca 359  Q
    ||||||||||||||||||||||| |||||||||||||| ||             ||||| || ||||||||||||||| |||||||||||||||||||||    
T  42677344 ttgagttgaacattccaactcatcttcagcagcttccggat-------------acggtaaactaaaacaggaatatttccattgaacttgaaattatca 42677258  T
Q  360 gaaatcatgtcaatcaaa 377  Q
    ||||||||||| ||||||    
T  42677257 gaaatcatgtcgatcaaa 42677240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 60 - 414
Target Start/End: Original strand, 50952411 - 50952754
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttgg--acc 157  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| || ||||| ||| ||||    |      
T  50952411 agagggcaaagtccaaaagaaaacaaaattaagaagctaatcgaacattcctaggtatgcaagccccagataaatcataaaaaatgatacttttttaatt 50952510  T
Q  158 tcattaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtat 257  Q
    |||  ||||||| |||||| ||||| ||||| |||  |||  ||||||||| ||| ||||||||| |||| ||||||||||||| |||| || |||||||    
T  50952511 tcacaaggaggatactccaacactagaaaattaaaaagatctgtagaaatgcttatattagcgagccaatcagcactcctattttcttcacgccaagtat 50952610  T
Q  258 ggttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattat 357  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||      ||||       ||||||| |||||||||||||||||||||||||||    
T  50952611 ggttgagttgaacattccaactcatcttcagcagcttccggatccggt------aaac-------taaaacatgaatattcccattgaacttgaaattat 50952697  T
Q  358 cagaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 414  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||| ||| ||||    
T  50952698 cagaaatcatgtcgatcaaaatctttgaatcactttccactataagattagagtaat 50952754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 60 - 410
Target Start/End: Original strand, 34553719 - 34554055
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctc 159  Q
    |||| |||||||||||||  ||| |||| ||| ||| ||||||||||||| ||||||||||||| | |||||||| ||||||||||||| ||||||||||    
T  34553719 agagagcaaagcccaaaaaaaaa-aaaactaacaagctaatcgaacattcataggcatgcaagctctggataaatcatcaaaaaggattttttggacctc 34553817  T
Q  160 attaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatgg 259  Q
    | |||||||| |||||| ||| | ||||| ||||||||| ||| |||||||||||||||||||||||| |||||| ||||||||||| |  |||||||||    
T  34553818 actaggaggagactccaacacaagaaaattaaagtgatatgtataaatgtttaaattagcgagtcaatcagcacttctatttccttcacaccaagtatgg 34553917  T
Q  260 ttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatca 359  Q
    ||||||||||||||| ||||||| ||||||| |||| | |||             | ||||| ||||| || |||||||||||  || |  |||||||||    
T  34553918 ttgagttgaacattctaactcatcttcagcatcttctggatc-------------cagtgaactaaaatagaaatattcccatcaaattcaaaattatca 34554004  T
Q  360 gaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaa 410  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||||||    
T  34554005 gaaatcatgtcgataaaaatctttgaatcactttccactataagatgagaa 34554055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 22065292 - 22065381
Alignment:
Q  318 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 407  Q
    |||| ||||| ||| | ||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  22065292 tgaactaaaataggcacattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 22065381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 6294259 - 6294205
Alignment:
Q  75 aaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccgga 129  Q
    |||||||| |||| |||||| |||| || || |||||||||||||||||||||||    
T  6294259 aaaggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccgga 6294205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 38168202 - 38168256
Alignment:
Q  75 aaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccgga 129  Q
    |||||||| |||| |||||| |||| || || |||||||||||||||||||||||    
T  38168202 aaaggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccgga 38168256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 39476326 - 39476256
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaag 122  Q
    |||||||||||||| |||  |||||| |||| |||| |||||| |||| || || ||||||||||||||||    
T  39476326 ggtataaaagaggggaaaatccaaaaagaaagaaaagtaagaaattaaacggacgttcctaggcatgcaag 39476256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 22065048 - 22065116
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccgga 129  Q
    |||||||||||||||| || ||| ||| | | ||| |||| || ||||||||||||||||||||||||||    
T  22065048 agagggcaaagcccaagagaaaagaaact-acgaaattaaccggacattcctaggcatgcaagccccgga 22065116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 6293995 - 6293939
Alignment:
Q  352 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 408  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  6293995 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 6293939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 22065199 - 22065279
Alignment:
Q  212 aaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagc 292  Q
    |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||    
T  22065199 aaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagc 22065279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 60 - 414
Target Start/End: Original strand, 8019591 - 8019931
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctc 159  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  8019591 agagggcaaagcccaaaagaaaacaaaattaagaagttaatcgaacattcttaggcatgcaagtcccggataaatcatcaaaaaggattcttttgacctc 8019690  T
Q  160 attaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatgg 259  Q
    |  ||||||| |||||||||| | ||||| ||| ||||  |||||| |  ||||||||||||| |||| |||||||||||||||||| || |||||||||    
T  8019691 acaaggaggagactccagcacaagaaaattaaa-tgatctgtagaattacttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgg 8019789  T
Q  260 ttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatca 359  Q
     |||||||||||||||||||||| |||||||| ||||| ||             ||||| || |||||||||||||||||||||||||||||||||||||    
T  8019790 gtgagttgaacattccaactcatcttcagcagattccggat-------------acggtaaactaaaacaggaatattcccattgaacttgaaattatca 8019876  T
Q  360 gaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 414  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  8019877 gaaatcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 8019931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 60 - 414
Target Start/End: Complemental strand, 48619287 - 48618946
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctc 159  Q
    |||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || |||    
T  48619287 agagggcaaagctcaaaagaaaacaaaattaagaagctaatcgaacattcctaagcatgcaagccccggataaatcatcaaaaaggattcttttgatctc 48619188  T
Q  160 attaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatgg 259  Q
    |  ||||||| |||||| ||||| ||||| ||| ||||  ||||||||| ||||||||||||| |||| ||||||| |||||||||| || |||||||||    
T  48619187 agaaggaggagactccaacactagaaaattaaaatgatttgtagaaatgcttaaattagcgagccaatcagcactcttatttccttcacgccaagtatgg 48619088  T
Q  260 ttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatca 359  Q
    ||||||||||||||||||||||| |||||||||||||| ||             || || || ||||||||||||||||||||| |||||||||||||||    
T  48619087 ttgagttgaacattccaactcatcttcagcagcttccggat-------------acagtaaactaaaacaggaatattcccattaaacttgaaattatca 48619001  T
Q  360 gaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 414  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||    
T  48619000 gaaatcatgtcaatcaaaatctttgaatcactttccactataagataagagtaat 48618946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 52 - 405
Target Start/End: Original strand, 29213567 - 29213907
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctt 151  Q
    ||||||| |||||||||||| ||| |  |||||||| ||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  29213567 ggtataagagagggcaaagctcaacaa-aaacaaaactaacaagctaatcgaacattcctaggcatgcaagcccaggataaatcatcaaaaaagattctt 29213665  T
Q  152 tggacctcattaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcc-tatttccttcgcgt 250  Q
    ||||||||| |||||||| |||||| ||| | ||||| ||||||||  ||||||||| |||||||||||||||||| | |||||| | |||| ||| ||     
T  29213666 tggacctcactaggaggagactccaacacaagaaaattaaagtgatctgtagaaatgcttaaattagcgagtcaatcaacactccttttttctttcacgc 29213765  T
Q  251 caagtatggttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttg 350  Q
    |||||||||||||||||||||||||||||||| ||||  |||||| | |||             ||||||| |||||||| |||||| ||||||||||||    
T  29213766 caagtatggttgagttgaacattccaactcatcttcaatagcttctggatc-------------cggtgaagtaaaacagaaatatttccattgaacttg 29213852  T
Q  351 aaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagat 405  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  29213853 aaattatcagaaatcatgtcgatcaaaatctttgaatcactttccactacaagat 29213907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 407
Target Start/End: Complemental strand, 24473659 - 24473467
Alignment:
Q  202 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttccgaatc 301  Q
    ||||||| | |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||         
T  24473659 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc----- 24473565  T
Q  302 cggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactata 401  Q
            | | ||| |||| ||||| ||| ||||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||    
T  24473564 --------tgatacgatgaactaaaataggcatattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaata 24473473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 24468711 - 24468617
Alignment:
Q  202 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 296  Q
    ||||||| | |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||    
T  24468711 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 24468617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 5791302 - 5791376
Alignment:
Q  53 gtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccg 127  Q
    |||||||||||||||||||| |||  |||| |||| |||||| |||| || || ||| ||| |||||||||||||    
T  5791302 gtataaaagagggcaaagcctaaagagaaagaaaactaagaaattaaacggacgttcttagacatgcaagccccg 5791376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 46045886 - 46045830
Alignment:
Q  352 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 408  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  46045886 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 46045830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 60 - 414
Target Start/End: Original strand, 18258985 - 18259326
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctc 159  Q
    ||||||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  18258985 agagggcaaagcccaaaagaaaataaaatttagaagctaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaatgattcttttgacctc 18259084  T
Q  160 attaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatgg 259  Q
    |  ||||||| |||||| ||||| ||||| ||| ||||  || |||||| ||||||||||||| |||| ||||||| ||||||||||||| || ||||||    
T  18259085 acaaggaggagactccaacactagaaaattaaaatgatctgtcgaaatgcttaaattagcgagccaatcagcactcatatttccttcgcgccaggtatgg 18259184  T
Q  260 ttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatca 359  Q
    |||||||||||||| ||||| || |||||||||||||| |||||||      ||||       ||||||| |||||||||||||||| ||| ||||||||    
T  18259185 ttgagttgaacatttcaacttatcttcagcagcttccggatccggt------aaac-------taaaacaagaatattcccattgaatttggaattatca 18259271  T
Q  360 gaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 414  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  18259272 gaaatcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 18259326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 52 - 414
Target Start/End: Complemental strand, 22540571 - 22540222
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctt 151  Q
    ||||||| |||||||||||||||||   |||||||||||||||| |||||||||||| ||| |||||||||| |||||||||| |||||||| |||||||    
T  22540571 ggtataagagagggcaaagcccaaacaaaaacaaaattaagaagctaatcgaacatttctatgcatgcaagctccggataaatcatcaaaaatgattctt 22540472  T
Q  152 tggacctcattaggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtc 251  Q
    | |||||||  ||||||| ||| || ||||| |||||  || ||||  ||||||||| |||||||||||||||||| | |||||||||||||||  || |    
T  22540471 ttgacctcacaaggaggagacttcaacactagaaaatttaaatgatctgtagaaatgcttaaattagcgagtcaatcaacactcctatttcctttacgcc 22540372  T
Q  252 aagtatggttgagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttga 351  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||      ||||       ||||||||||||||| |||| ||||||||    
T  22540371 aagtatggttgagttgaacattccaactcatcttcagcagcttccggatccagt------aaac-------taaaacaggaatatttccatcgaacttga 22540285  T
Q  352 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 414  Q
    ||||||||||||||| ||| |||||| |||||||||||||||| |||||||||||||| ||||    
T  22540284 aattatcagaaatcacgtcgatcaaaatctttgaatcactttcaactataagatgagagtaat 22540222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 80 - 414
Target Start/End: Original strand, 34080607 - 34080925
Alignment:
Q  80 aaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattctttggacctcattaggaggaaactccagca 179  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| ||  |||||| ||||||||||||| ||||||||||| ||||||   |||||| ||    
T  34080607 aaacaaaattaaaaaactaatcgaacatttctaggcatgcaagctccaaataaatcatcaaaaaggattttttggacctcactaggag---actccaaca 34080703  T
Q  180 ctaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaact 279  Q
    ||| ||||| ||||||||| ||| |||||||||||||||| || |||| | ||||| | |||||||| || ||||||||||||||||||||||||||||     
T  34080704 ctataaaattaaagtgatatgtaaaaatgtttaaattagcaagccaatcaacactcatgtttccttcacgccaagtatggttgagttgaacattccaacc 34080803  T
Q  280 cattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaact 379  Q
    ||| |||||||||||| | |||             ||||||| ||||||| |||||||| ||||||||||||| |||||||||||||| || |||||| |    
T  34080804 catcttcagcagcttctggatc-------------cggtgaactaaaacaagaatattcgcattgaacttgaatttatcagaaatcatatccatcaaaat 34080890  T
Q  380 ctttgaatcactttccactataagatgagaataat 414  Q
    |||| ||||||||||||||||||||||||| ||||    
T  34080891 ctttaaatcactttccactataagatgagagtaat 34080925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 407
Target Start/End: Original strand, 4560304 - 4560496
Alignment:
Q  202 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttccgaatc 301  Q
    ||||||| | |||||||| ||||||| |||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||         
T  4560304 agaaatgctaaaattagcaagtcaatcagcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc----- 4560398  T
Q  302 cggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactata 401  Q
            | | ||| |||| ||||| ||| ||||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||    
T  4560399 --------tgatacgatgaactaaaataggcatattcccattaaacttgaacttttcagaaatcatgtcgatcaatatcttcgagtcactttccacaata 4560490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 13236789 - 13236721
Alignment:
Q  84 aaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaaggattcttt 152  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||  |||||||| ||||||||    
T  13236789 aaaattaagaagttaatcgaacattcctaagcatgcaagcctcggataaaacatcaaaaatgattcttt 13236721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 18883489 - 18883400
Alignment:
Q  318 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 407  Q
    |||| ||||| ||| ||||||||||| ||||| || || || ||||||||||| |||||  ||||||| ||| |||||||||||||||||    
T  18883489 tgaactaaaatagggatattcccattaaacttaaacttgtccgaaatcatgtcgatcaatatctttgagtcattttccactataagatga 18883400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 18934264 - 18934170
Alignment:
Q  202 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 296  Q
    ||||||| | |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||    
T  18934264 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 18934170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 18934161 - 18934072
Alignment:
Q  318 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 407  Q
    |||| ||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| |  ||||||||||| |||||||||    
T  18934161 tgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgggtcactttccacaataagatga 18934072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 7531191 - 7531127
Alignment:
Q  80 aaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaataatcaaaaag 144  Q
    |||||||| ||| ||| ||  |||||| |||||||||||||||||||||| || | |||||||||    
T  7531191 aaacaaaactaaaaagctatccgaacactcctaggcatgcaagccccggaaaagtcatcaaaaag 7531127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 14024914 - 14024858
Alignment:
Q  352 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 408  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  14024914 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 14024858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 1223053 - 1223142
Alignment:
Q  318 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 407  Q
    |||| ||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  1223053 tgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 1223142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 1222827 - 1222895
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccgga 129  Q
    |||||||||||||||| || ||| ||| | | ||| |||| || ||||||||||||||||||||||||||    
T  1222827 agagggcaaagcccaagagaaaagaaact-acgaaattaaccggacattcctaggcatgcaagccccgga 1222895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 20679026 - 20679071
Alignment:
Q  101 cgaacattcctaggcatgcaagccccggataaataatcaaaaagga 146  Q
    ||||||||||||||||||||||||||||| | || |||||| ||||    
T  20679026 cgaacattcctaggcatgcaagccccggaaatatcatcaaatagga 20679071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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