View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15317_low_17 (Length: 406)

Name: NF15317_low_17
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15317_low_17
NF15317_low_17
[»] chr1 (2 HSPs)
chr1 (156-390)||(31959269-31959504)
chr1 (1-109)||(31959516-31959624)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 156 - 390
Target Start/End: Complemental strand, 31959504 - 31959269
Alignment:
Q  156 agggcatgtagaagaaattaatggatacaaaaagaggaatggagaatttacacttgtcatgcaagggaaagatgaatgttccatgtttggaggtacaggt 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31959504 agggcatgtagaagaaattaatggatacaaaaagaggaatggagaatttacacttgtcatgcaagggaaagatgattgttccatgtttggaggtacaggt 31959405  T
Q  256 ggcatttgaagcagcatagtgcatgcagcatgacacatagaagaccaatgttgtatgcatgcagaacacgaattctaaagacagattaagctggtgatct 355  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31959404 ggcatttgaagcagcaaagtgcatgcagcatgacacatagaagaccaattttgtatgcatgcagaacacgaattctaaagacagattaagctggtgatct 31959305  T
Q  356 ctagaactaaacacacgttatccttct-tttctttt 390  Q
    ||||||||||||||||||||||||||| ||||||||    
T  31959304 ctagaactaaacacacgttatccttctctttctttt 31959269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 31959624 - 31959516
Alignment:
Q  1 aattgttctgcttgtggtctctgtggctgttcttgactcatgattctgcactttgattttgatgctttacgtttcctagatcgatattgtgtgataattt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31959624 aattgctctgcttgtggtctctgtggctgttcttgactcatgattctgcactttgattttgatgctttacgtttcctagatcgatattgtgtgataattt 31959525  T
Q  101 attgcagtg 109  Q
    |||||||||    
T  31959524 attgcagtg 31959516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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