View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15317_low_18 (Length: 378)
Name: NF15317_low_18
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 39688606 - 39688968
Alignment:
| Q |
1 |
aactaagttcataagtgcaagaagaatctagctacctagctgcaatctcataagaataagaaacatatgctgctcaaatgaacaaaattaacaaatttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39688606 |
aactaagttcataagtgcaagaagaatctagctacctagctgcaatctcataagaataagaaacatatgctgctcaaatgaacaaaattaacaaatttac |
39688705 |
T |
|
| Q |
101 |
gatcaacttcacaatgaaaaagtgttaagatttacataacttgtgaatatgatgaagcttttttaggttgtattgtgttctagtgtcctaggaactctca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39688706 |
gatcaacttcacaatgaaaaagtgttaagatttacataacttgtgaatatgatgaagcttttttaggttgtattgtgttctagtgtcctaggagctctca |
39688805 |
T |
|
| Q |
201 |
ataaagtcaaagttgatga--------------------tccatgctatgataacaacagtgttacattcttcacctgtatagataataacatatctttg |
280 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39688806 |
ataaagtcaaagttgatgatacaagacctaattttatattccatgctatgataacaacagtgttacattcttcacctgtgtagataataacatatctttg |
39688905 |
T |
|
| Q |
281 |
attaattattgcacaatgataccaatatgtaaccattgagataaatgtgaaagtgaaatgtgt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39688906 |
attaattattgcacaatgataccaatatgtaaccattgagataaatgtgaaagtgaaatgtgt |
39688968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 30903066 - 30903004
Alignment:
| Q |
5 |
aagttcataagtgcaagaagaatctagctacctagctgcaatctcataagaataagaaacata |
67 |
Q |
| |
|
||||| |||| ||| ||| ||||| || |||||||||||||||||| ||||||||||||||| |
|
|
| T |
30903066 |
aagttaataactgctagatgaatcaaggtacctagctgcaatctcaggagaataagaaacata |
30903004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University