View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_low_19 (Length: 372)
Name: NF15317_low_19
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 9652341 - 9652694
Alignment:
| Q |
1 |
agggctcctgaagatctgcctccccaactattatttattcaccaggtaatttgaacttatcttatgacataaacgctagtgtaagtttttgaaattgaaa |
100 |
Q |
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| T |
9652341 |
agggctcctgaagatctgcctccccaactattatttattcaccaggtaatttgaacttatcttatgacataaacactagtgtaagtttttgaaattgaaa |
9652440 |
T |
|
| Q |
101 |
gaagttttgaaaatagtttgccgtgtctataaattgttttcggcttatcctcttatttcttttaacttgaaacagggacaaaaataccctacagaattgc |
200 |
Q |
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| T |
9652441 |
gaagttttgaaaatagtttgccgtgtctataaattgttttcggcttatcctcttatttcttttaacttgaaacagggacaaaaataccctaaagaattgc |
9652540 |
T |
|
| Q |
201 |
actggcacccaaagattcctggaatgatagtatctactgcagcagatggattcaatgtccttatgccttcaaacatttgagagcaccctgtcatcagacg |
300 |
Q |
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| T |
9652541 |
actggcacccaaagattcctggaatgatagtatctactgcagcagatggattcaatgtccttatgccttcaaacatttgagagcaccctgtcatcagacg |
9652640 |
T |
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| Q |
301 |
gtgcttgatacatgtcatttgttgttcagttttcaagcatgttaccatggagtt |
354 |
Q |
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| T |
9652641 |
gtgcttgatacatgtcatttgttgttcagttttcaagcatgttaccacggagtt |
9652694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 149 - 339
Target Start/End: Complemental strand, 34734687 - 34734499
Alignment:
| Q |
149 |
cctcttatttcttttaacttgaaacagggacaaaaataccctacagaattgcactggcacccaaagattcctggaatgatagtatctactgcagcagatg |
248 |
Q |
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| T |
34734687 |
cctcttatttccttgaacttgcaacagggacaaaaagaccccaaagaactgcattggcacacacagattcctggaatgatagtatgtactgcagcagatg |
34734588 |
T |
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| Q |
249 |
gattcaatgtccttatgccttcaaacatttgagagcaccctgtcatcagacggtgcttgatacatgtcatttgttgttcagttttcaagca |
339 |
Q |
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| T |
34734587 |
gattcaacgtcctcatgccttcaaata-ttcagagcaccttgccatcagaagctgcatgatacacggca-ttgctgttcagttttcaagca |
34734499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 34735034 - 34734983
Alignment:
| Q |
4 |
gctcctgaagatctgcctccccaactattatttattcaccaggtaatttgaa |
55 |
Q |
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| T |
34735034 |
gctcctgaagatctgcctccccaactattgtttattcaccaggtaatttgaa |
34734983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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