View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15317_low_2 (Length: 825)

Name: NF15317_low_2
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15317_low_2
NF15317_low_2
[»] chr4 (18 HSPs)
chr4 (1-282)||(35254396-35254674)
chr4 (328-587)||(35248218-35248486)
chr4 (328-545)||(35254716-35254942)
chr4 (666-825)||(35255018-35255177)
chr4 (151-282)||(35248045-35248176)
chr4 (1-133)||(35247874-35248008)
chr4 (171-269)||(35272626-35272724)
chr4 (324-366)||(35279400-35279442)
chr4 (748-825)||(40407829-40407906)
chr4 (757-825)||(2158829-2158897)
chr4 (757-825)||(4377480-4377549)
chr4 (754-801)||(32934384-32934431)
chr4 (757-825)||(2815772-2815840)
chr4 (605-649)||(35248659-35248703)
chr4 (644-696)||(35248926-35248978)
chr4 (757-825)||(36248071-36248139)
chr4 (605-643)||(35252048-35252086)
chr4 (776-825)||(1112216-1112265)
[»] chr7 (14 HSPs)
chr7 (748-825)||(25617849-25617926)
chr7 (748-825)||(1247870-1247947)
chr7 (743-825)||(8062530-8062612)
chr7 (757-825)||(2945233-2945301)
chr7 (757-825)||(27080611-27080679)
chr7 (757-825)||(27197622-27197690)
chr7 (757-825)||(25233147-25233215)
chr7 (757-825)||(38300214-38300282)
chr7 (757-825)||(39785697-39785765)
chr7 (757-823)||(8256747-8256813)
chr7 (748-825)||(38838303-38838380)
chr7 (757-825)||(24658621-24658689)
chr7 (756-825)||(26787475-26787545)
chr7 (607-659)||(35458417-35458469)
[»] chr8 (7 HSPs)
chr8 (748-825)||(41303343-41303420)
chr8 (747-825)||(4587124-4587202)
chr8 (756-823)||(3662179-3662247)
chr8 (757-825)||(2148580-2148648)
chr8 (757-825)||(44873485-44873553)
chr8 (760-825)||(6802599-6802664)
chr8 (760-825)||(24556743-24556808)
[»] chr6 (7 HSPs)
chr6 (757-825)||(6689395-6689463)
chr6 (743-825)||(22260208-22260289)
chr6 (757-825)||(21883456-21883524)
chr6 (757-825)||(2919880-2919948)
chr6 (760-820)||(30705489-30705549)
chr6 (756-814)||(14607613-14607671)
chr6 (768-825)||(25085270-25085327)
[»] chr2 (5 HSPs)
chr2 (757-825)||(3356932-3357000)
chr2 (756-825)||(32033172-32033241)
chr2 (757-825)||(38417930-38417998)
chr2 (617-660)||(17452112-17452155)
chr2 (748-825)||(20966345-20966418)
[»] chr5 (10 HSPs)
chr5 (748-821)||(11498223-11498296)
chr5 (748-821)||(11505579-11505652)
chr5 (748-821)||(11512973-11513046)
chr5 (748-821)||(11520349-11520422)
chr5 (748-821)||(11527757-11527830)
chr5 (748-821)||(11535163-11535236)
chr5 (757-825)||(43144762-43144830)
chr5 (757-825)||(36745138-36745206)
chr5 (768-825)||(5569170-5569227)
chr5 (757-814)||(30078090-30078147)
[»] chr3 (5 HSPs)
chr3 (757-821)||(35502369-35502433)
chr3 (757-824)||(24310075-24310142)
chr3 (752-825)||(41897685-41897758)
chr3 (757-825)||(7856697-7856765)
chr3 (757-825)||(23778456-23778524)
[»] chr1 (7 HSPs)
chr1 (757-825)||(6226881-6226949)
chr1 (757-825)||(23353586-23353654)
chr1 (756-825)||(10781008-10781077)
chr1 (757-825)||(25031144-25031212)
chr1 (782-825)||(31738111-31738154)
chr1 (756-825)||(9539452-9539521)
chr1 (607-660)||(47543329-47543382)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 35254396 - 35254674
Alignment:
Q  1 aaagaaaatataataagaagataaagaatagaatatgtagaatcacacaaaagctgaattatccatattatataagaccaatgaaataatgcaaggagca 100  Q
    ||||||||||||||||||   ||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35254396 aaagaaaatataataaga---taaagaaaagaaaatgtagaatcacacacaagctgaattatccatattatataagaccaatgaaataatgcaaggagca 35254492  T
Q  101 tcaaagaaataaagatttttgggtaaaatgaattaagcagaagcatacacaccagggggaaaatgtccggtaacatgagcttcattttttaaaatctcag 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35254493 tcaaagaaataaagatttttaggtaaaatgaattaagcagaagcatacacaccagggggaaaatgtccggtaacatgagcttcatttttgaaaatctcag 35254592  T
Q  201 cagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttgaaaactacaaagaacacacaggattcatattac 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35254593 cagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttgaaaactacaaagaacacacaggattcatattac 35254674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 328 - 587
Target Start/End: Original strand, 35248218 - 35248486
Alignment:
Q  328 catgcatgcatgcagcattgtactctactcacagttcttcttttgggt---------ccatgttaaaggaaatggttgttgcacttagatgaagaagatg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |         |||||||||||||||||||| ||||||||||||||||||||||    
T  35248218 catgcatgcatgcagcattgtactctactcacagttcttctttgggattttttgtatccatgttaaaggaaatggttcttgcacttagatgaagaagatg 35248317  T
Q  419 attaatgaaagaaaatgaaaggagagaaagtgaagtactgcaagaaaatagcgagtgaccatgcagagtcatgcataacaagaaaatcttttcattttta 518  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35248318 attaatgaaagaaaattaaaggagagaaagtgaagtactgcaagacaatagcgagtgaccatgcagagtcatgcataacaagaaaatcttttcattttta 35248417  T
Q  519 tactgtggcggttaagtgtctggttagnnnnnnnnngttggtttctttttggattgtcacatatataat 587  Q
    ||||||||||||||||||| |||||||         |||||||| ||||||||||||||||||||||||    
T  35248418 tactgtggcggttaagtgtgtggttagtttttttttgttggtttgtttttggattgtcacatatataat 35248486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 328 - 545
Target Start/End: Original strand, 35254716 - 35254942
Alignment:
Q  328 catgcatgcatgcagcattgtactctactcacagttcttcttttgggt---------ccatgttaaaggaaatggttgttgcacttagatgaagaagatg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |         |||||||||||||||||||| ||||||||||||||||||||||    
T  35254716 catgcatgcatgcagcattgtactctactcacagttcttctttgggattttttgtatccatgttaaaggaaatggttcttgcacttagatgaagaagatg 35254815  T
Q  419 attaatgaaagaaaatgaaaggagagaaagtgaagtactgcaagaaaatagcgagtgaccatgcagagtcatgcataacaagaaaatcttttcattttta 518  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35254816 attaatgaaagaaaataaaaggagagaaagtgaagtactgcaagacaatagcgagtgaccatgcagagtcatgcataacaagaaaatcttttcattttta 35254915  T
Q  519 tactgtggcggttaagtgtctggttag 545  Q
    ||||||||||||||||||| |||||||    
T  35254916 tactgtggcggttaagtgtgtggttag 35254942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 666 - 825
Target Start/End: Original strand, 35255018 - 35255177
Alignment:
Q  666 cgagtctttttcaattgctcaactctatctccgtcacggtcggctctagacgtttgctgcatggagggctataataactggttaagttgctaacacttgc 765  Q
    ||||||||||||||||||||||||||||||||| || || ||| |||||||||||| ||||||  ||||||||| | || ||||||||||||||| | ||    
T  35255018 cgagtctttttcaattgctcaactctatctccgccaggggcggatctagacgtttggtgcatgtggggctataaaatctagttaagttgctaacattggc 35255117  T
Q  766 acttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35255118 acttgttatcgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 35255177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 151 - 282
Target Start/End: Original strand, 35248045 - 35248176
Alignment:
Q  151 accagggggaaaatgtccggtaacatgagcttcattttttaaaatctcagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttga 250  Q
    ||||||| ||| |||||||| |||  ||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  35248045 accagggagaatatgtccggaaactcgagcttcatttttgaaaatcttagcagtgtttgacaatcccttcttcttgaagtaatcacacagaaagttttga 35248144  T
Q  251 aaactacaaagaacacacaggattcatattac 282  Q
    ||||||||||||||||||||||||| ||||||    
T  35248145 aaactacaaagaacacacaggattcgtattac 35248176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 35247874 - 35248008
Alignment:
Q  1 aaagaaaatataataagaagataaagaatagaatatgtagaatcacacaaaagctgaattatccatattatataagaccaatgaa----ataatgcaagg 96  Q
    |||||||||||||||  ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||  || | ||||||    |||||||||||    
T  35247874 aaagaaaatataataccaagataaagaaaagaatatgtagaatcacacaaaagctcaattatccatattata--aggcaaatgaatagtataatgcaagg 35247971  T
Q  97 agcatcaaagaaataaagatttttgggtaaaatgaat 133  Q
    ||||||||||||  ||   ||||||||||||||||||    
T  35247972 agcatcaaagaagaaacagtttttgggtaaaatgaat 35248008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 269
Target Start/End: Original strand, 35272626 - 35272724
Alignment:
Q  171 taacatgagcttcattttttaaaatctcagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttgaaaactacaaagaacacaca 269  Q
    |||| |||||||||||||  |||||||  ||||| |   | ||||| ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  35272626 taacttgagcttcattttggaaaatctgtgcagtttccaagaatcctttcttcttgaggtaatcatgcagaaagatttgaaaactacacagaacacaca 35272724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 35279400 - 35279442
Alignment:
Q  324 catgcatgcatgcatgcagcattgtactctactcacagttctt 366  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35279400 catgcatgcatgcatgcagcattgtactctactcacagttctt 35279442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 748 - 825
Target Start/End: Complemental strand, 40407906 - 40407829
Alignment:
Q  748 taagttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||||||||| || |||||| |||||||||||||| |||||| |||| ||||||||| || |||||| ||||    
T  40407906 taagttgctaacacttacaattgctatcgacaaaagcaaaaccaactttaaaagcttataaattattgcaaatatgtt 40407829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 2158829 - 2158897
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    ||||||| |||||||||||| ||| ||||||| ||||||||||| |||| ||| |||||||||||||||    
T  2158829 aacacttacacttgctaccggcaagagcaaaaccaacttcaaaagcttacaaaccatagcaaatgtgtt 2158897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 4377480 - 4377549
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttat-aaatcatagcaaatgtgtt 825  Q
    |||||||||| ||||||||| ||| |||||| ||||||||||||  |||| |||||||||||||||||||    
T  4377480 aacacttgcaattgctaccggcaagagcaaagtcaacttcaaaagtttataaaatcatagcaaatgtgtt 4377549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 754 - 801
Target Start/End: Complemental strand, 32934431 - 32934384
Alignment:
Q  754 gctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaa 801  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  32934431 gctaacatttgcacttgctaccgacaaaagcaaagccaacttcaaaaa 32934384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 2815772 - 2815840
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| ||||||||| ||| ||||||  |||||| ||||  ||||||| |||||||||||||||    
T  2815772 aacacttgcagttgctaccggcaagagcaaagccaacttgaaaagtttataaaccatagcaaatgtgtt 2815840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 605 - 649
Target Start/End: Original strand, 35248659 - 35248703
Alignment:
Q  605 actagaaatttgaaacaaaacttaaaattaataagtaatcactaa 649  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||||    
T  35248659 actagaattttgaaacaaaacttaaaattaaaaagaaatcactaa 35248703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 644 - 696
Target Start/End: Original strand, 35248926 - 35248978
Alignment:
Q  644 cactaaatatttacatcaaatgcgagtctttttcaattgctcaactctatctc 696  Q
    ||||||||||||| ||| ||||  |||||||||||| ||||||||||||||||    
T  35248926 cactaaatatttagatccaatggaagtctttttcaagtgctcaactctatctc 35248978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 36248071 - 36248139
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| ||||||||| ||| ||||||  |||||||||||  |||||||||||| |||| |||||    
T  36248071 aacacttgcagttgctaccggcaagagcaaagccaacttcaaaagtttataaatcataacaaaagtgtt 36248139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 643
Target Start/End: Complemental strand, 35252086 - 35252048
Alignment:
Q  605 actagaaatttgaaacaaaacttaaaattaataagtaat 643  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  35252086 actagaaatttgaaactaaacttaaaattgataagtaat 35252048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 776 - 825
Target Start/End: Original strand, 1112216 - 1112265
Alignment:
Q  776 gacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    ||||||||||||  |||||||||||||||||||| |||  ||||||||||    
T  1112216 gacaaaagcaaagccaacttcaaaaacttataaaccatcacaaatgtgtt 1112265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 748 - 825
Target Start/End: Original strand, 25617849 - 25617926
Alignment:
Q  748 taagttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  25617849 taagttgctaacacttgcacttgctaccgacaaatacaaaatcaacttcaaaagcttataaatcatagcaaatgtgtt 25617926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 748 - 825
Target Start/End: Complemental strand, 1247947 - 1247870
Alignment:
Q  748 taagttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||||||||||||||| ||||||||||||  ||| |||||||||||| ||||||||||||||||||||||||    
T  1247947 taagttgctaacacttgcactttctaccgacaaaattaaagtcaacttcaaaagcttataaatcatagcaaatgtgtt 1247870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 743 - 825
Target Start/End: Original strand, 8062530 - 8062612
Alignment:
Q  743 ctggttaagttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||| |||||||||||||||||||||||  ||||  |||||||||  ||| ||||||||||||||||||||||||||||||||    
T  8062530 ctggctaagttgctaacacttgcacttggcaccggtaaaagcaaagccaatttcaaaaacttataaatcatagcaaatgtgtt 8062612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 757 - 825
Target Start/End: Complemental strand, 2945301 - 2945233
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| ||||||||||||| |||||| ||||||||||||  |||||||||||||||||||||||    
T  2945301 aacacttgcagttgctaccgacaagagcaaagtcaacttcaaaagtttataaatcatagcaaatgtgtt 2945233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 27080611 - 27080679
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| ||||||||||||||||  ||  ||||||||||||||||||||||||||||||||||||    
T  27080611 aacacttgcagttgctaccgacaaaagagaagccaacttcaaaaacttataaatcatagcaaatgtgtt 27080679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 757 - 825
Target Start/End: Complemental strand, 27197690 - 27197622
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| ||||||||||||||||  ||  ||||||||||||||||||||||||||||||||||||    
T  27197690 aacacttgcagttgctaccgacaaaagagaagccaacttcaaaaacttataaatcatagcaaatgtgtt 27197622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 25233147 - 25233215
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    ||||||||||||||||||| |||| ||||||  ||| ||||||| ||||||||||||| ||||||||||    
T  25233147 aacacttgcacttgctacccacaagagcaaagccaatttcaaaagcttataaatcataacaaatgtgtt 25233215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 757 - 825
Target Start/End: Complemental strand, 38300282 - 38300214
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| ||||||||| ||| |||||| ||||||||||||  ||||||| |||||||||||||||    
T  38300282 aacacttgcaattgctaccggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgtt 38300214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 39785697 - 39785765
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| |||||||| |||| ||||||| |||||||||||||||||| | || ||||||||||||    
T  39785697 aacacttgcagttgctaccaacaagagcaaaaccaacttcaaaaacttatacaccaaagcaaatgtgtt 39785765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 757 - 823
Target Start/End: Original strand, 8256747 - 8256813
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtg 823  Q
    |||||||||| ||| ||||| ||| ||||||||||||||||||| ||||||||  ||||||||||||    
T  8256747 aacacttgcagttgttaccggcaagagcaaaatcaacttcaaaagcttataaacaatagcaaatgtg 8256813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 748 - 825
Target Start/End: Original strand, 38838303 - 38838380
Alignment:
Q  748 taagttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    ||||||||||||||||||| ||  || |||| ||||||||   |||||||||| |||||||||||| |||||||||||    
T  38838303 taagttgctaacacttgcatttattatcgaccaaagcaaagctaacttcaaaagcttataaatcattgcaaatgtgtt 38838380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 24658621 - 24658689
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| ||| || || ||| ||||||| |||||||||||  |||||||||||||||||||||||    
T  24658621 aacacttgcagttgttatcggcaagagcaaaaccaacttcaaaagtttataaatcatagcaaatgtgtt 24658689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 756 - 825
Target Start/End: Original strand, 26787475 - 26787545
Alignment:
Q  756 taacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaa-cttataaatcatagcaaatgtgtt 825  Q
    ||||||||||| ||| |||||| |||||||||||||||||||||||  ||||||| |||| ||||| ||||    
T  26787475 taacacttgcaattgataccgataaaagcaaaatcaacttcaaaaagtttataaaccataacaaatatgtt 26787545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 607 - 659
Target Start/End: Complemental strand, 35458469 - 35458417
Alignment:
Q  607 tagaaatttgaaacaaaacttaaaattaataagtaatcactaaatatttacat 659  Q
    ||||| ||| ||||||||||||||||| || ||||||||| ||||||||||||    
T  35458469 tagaatttttaaacaaaacttaaaatttattagtaatcacaaaatatttacat 35458417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 6e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 748 - 825
Target Start/End: Complemental strand, 41303420 - 41303343
Alignment:
Q  748 taagttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    ||||||||||||||||||| |||||| |||||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  41303420 taagttgctaacacttgcatttgctatcgacaaaagcaaaaccaacttcaaaagcttacaaatcatagcaaatgtgtt 41303343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 747 - 825
Target Start/End: Complemental strand, 4587202 - 4587124
Alignment:
Q  747 ttaagttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    ||||||||||||||||| ||||||||| | ||||||| |||| |||||||||||||||||||| ||| |||||||||||    
T  4587202 ttaagttgctaacacttacacttgctatcaacaaaagtaaaaccaacttcaaaaacttataaaccattgcaaatgtgtt 4587124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 756 - 823
Target Start/End: Original strand, 3662179 - 3662247
Alignment:
Q  756 taacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaac-ttataaatcatagcaaatgtg 823  Q
    ||||||||||| |||||||||  |||||||||  ||||||||||||| |||||||||||||||||||||    
T  3662179 taacacttgcatttgctaccgttaaaagcaaagccaacttcaaaaactttataaatcatagcaaatgtg 3662247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 2148580 - 2148648
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||| ||||| ||||||||||||| ||||||  || |||||||| |||||||||||||| |||||||||    
T  2148580 aacatttgcagttgctaccgacaagagcaaagccagcttcaaaagcttataaatcatagaaaatgtgtt 2148648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 44873485 - 44873553
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| ||||||||| ||||||||||  |||||||||||  |||||||||||| ||| ||||||    
T  44873485 aacacttgcagttgctaccggcaaaagcaaagccaacttcaaaagtttataaatcataacaattgtgtt 44873553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 760 - 825
Target Start/End: Complemental strand, 6802664 - 6802599
Alignment:
Q  760 acttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    ||||||| ||||||||| | | ||||||| ||||||||||| |||||||| |||  ||||||||||    
T  6802664 acttgcagttgctaccggcgagagcaaaaccaacttcaaaagcttataaagcatttcaaatgtgtt 6802599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 760 - 825
Target Start/End: Complemental strand, 24556808 - 24556743
Alignment:
Q  760 acttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    ||||||| |||||||||  || ||||||  ||||||||||| |||||||| |||| ||||||||||    
T  24556808 acttgcagttgctaccggtaagagcaaagccaacttcaaaatcttataaaccataacaaatgtgtt 24556743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 6689395 - 6689463
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| ||||||||| ||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  6689395 aacacttgcagttgctaccggcaagagcaaagtcaacttcaaaagcttataaatcatagcaaatgtgtt 6689463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 743 - 825
Target Start/End: Original strand, 22260208 - 22260289
Alignment:
Q  743 ctggttaagttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||| |||||||||||||||||||||| ||||||| ||||| |||  ||| ||||||| |||||||| |||||||||||||||    
T  22260208 ctggctaagttgctaacacttgcacttactaccgataaaagtaaagccaaattcaaaagcttataaa-catagcaaatgtgtt 22260289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 21883456 - 21883524
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| ||||||||| ||| ||||||  |||||||||||  ||||||| |||||||||||||||    
T  21883456 aacacttgcagttgctaccggcaagagcaaagccaacttcaaaagtttataaaccatagcaaatgtgtt 21883524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 825
Target Start/End: Complemental strand, 2919948 - 2919880
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| ||||||||| ||| ||||||| |||||||||||  | ||||| |||| ||||||||||    
T  2919948 aacacttgcagttgctaccggcaagagcaaaaccaacttcaaaagttaataaaccataacaaatgtgtt 2919880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 760 - 820
Target Start/End: Original strand, 30705489 - 30705549
Alignment:
Q  760 acttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaat 820  Q
    ||||||| ||||||||||||| |||||| | ||||||||| | ||||||| ||||||||||    
T  30705489 acttgcaattgctaccgacaagagcaaagttaacttcaaatatttataaaccatagcaaat 30705549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 756 - 814
Target Start/End: Complemental strand, 14607671 - 14607613
Alignment:
Q  756 taacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcata 814  Q
    ||||||||||| ||||||||| ||| |||||| ||||||||||||  ||||||| ||||    
T  14607671 taacacttgcagttgctaccgtcaagagcaaagtcaacttcaaaagtttataaaccata 14607613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 825
Target Start/End: Complemental strand, 25085327 - 25085270
Alignment:
Q  768 ttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    ||||||||||||||||||||   | |||||||| ||||| |||||||| |||||||||    
T  25085327 ttgctaccgacaaaagcaaagcaaccttcaaaagcttatgaatcatagtaaatgtgtt 25085270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 757 - 825
Target Start/End: Complemental strand, 3357000 - 3356932
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| |||||||| |||| |||||| ||||||||||||  |||||||||||||||||||||||    
T  3357000 aacacttgcagttgctaccaacaatagcaaagtcaacttcaaaagtttataaatcatagcaaatgtgtt 3356932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 756 - 825
Target Start/End: Original strand, 32033172 - 32033241
Alignment:
Q  756 taacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||||  || ||||| ||| ||||||| |||||||||||  |||||||||||||||||||||||    
T  32033172 taacacttgcagctgttaccggcaagagcaaaaccaacttcaaaagtttataaatcatagcaaatgtgtt 32033241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 38417930 - 38417998
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| |||||||   ||| |||| |||||||||||||| ||||||||||||| ||||| ||||    
T  38417930 aacacttgcaattgctacatgcaagagcacaatcaacttcaaaagcttataaatcataacaaatatgtt 38417998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 660
Target Start/End: Original strand, 17452112 - 17452155
Alignment:
Q  617 aaacaaaacttaaaattaataagtaatcactaaatatttacatc 660  Q
    |||||||| |||||||| || |||||||||||||||||||||||    
T  17452112 aaacaaaatttaaaatttattagtaatcactaaatatttacatc 17452155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 748 - 825
Target Start/End: Complemental strand, 20966418 - 20966345
Alignment:
Q  748 taagttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    ||||||||||| |||||| ||| || ||||||||||||||  ||| |||||||||||||||   ||||||||||||||    
T  20966418 taagttgctaatacttgcgctt-cttccgacaaaagcaaagccaatttcaaaaacttataa---atagcaaatgtgtt 20966345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 748 - 821
Target Start/End: Complemental strand, 11498296 - 11498223
Alignment:
Q  748 taagttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatg 821  Q
    |||||||||||||||||||||| |||| || |||||||||   |||||||||| ||||||||||||| ||||||    
T  11498296 taagttgctaacacttgcactttctactgataaaagcaaagcaaacttcaaaagcttataaatcatatcaaatg 11498223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 748 - 821
Target Start/End: Complemental strand, 11505652 - 11505579
Alignment:
Q  748 taagttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatg 821  Q
    |||||||||||||||||||||| ||| ||| |||||||||   |||||||||| ||||||||||||| ||||||    
T  11505652 taagttgctaacacttgcactttctatcgataaaagcaaagcaaacttcaaaagcttataaatcatatcaaatg 11505579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 748 - 821
Target Start/End: Complemental strand, 11513046 - 11512973
Alignment:
Q  748 taagttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatg 821  Q
    |||||||||||||||||||||| ||| ||| |||||||||   |||||||||| ||||||||||||| ||||||    
T  11513046 taagttgctaacacttgcactttctatcgataaaagcaaagcaaacttcaaaagcttataaatcatatcaaatg 11512973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 748 - 821
Target Start/End: Complemental strand, 11520422 - 11520349
Alignment:
Q  748 taagttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatg 821  Q
    |||||||||||||||||||||| ||| ||| |||||||||   |||||||||| ||||||||||||| ||||||    
T  11520422 taagttgctaacacttgcactttctatcgataaaagcaaagcaaacttcaaaagcttataaatcatatcaaatg 11520349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 748 - 821
Target Start/End: Complemental strand, 11527830 - 11527757
Alignment:
Q  748 taagttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatg 821  Q
    |||||||||||||||||||||| ||| ||| |||||||||   |||||||||| ||||||||||||| ||||||    
T  11527830 taagttgctaacacttgcactttctatcgataaaagcaaagcaaacttcaaaagcttataaatcatatcaaatg 11527757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 748 - 821
Target Start/End: Complemental strand, 11535236 - 11535163
Alignment:
Q  748 taagttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatg 821  Q
    |||||||||||||||||||||| ||||||| |||||| ||   |||||||||| ||||||||||||| ||||||    
T  11535236 taagttgctaacacttgcactttctaccgataaaagcgaagcaaacttcaaaagcttataaatcatatcaaatg 11535163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 43144762 - 43144830
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| ||||||||| ||| |||||| ||||||||||||  ||||||| |||||||||||||||    
T  43144762 aacacttgcagttgctaccggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgtt 43144830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 36745138 - 36745206
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| ||| ||||||||| |||||| ||||||||||||  ||||||| |||| ||||||||||    
T  36745138 aacacttgcagttgttaccgacaagagcaaagtcaacttcaaaagtttataaaccatatcaaatgtgtt 36745206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 768 - 825
Target Start/End: Original strand, 5569170 - 5569227
Alignment:
Q  768 ttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||| |||| |||||| |||||||||||| || |||||||||| ||||||||||    
T  5569170 ttgctacccacaagagcaaagtcaacttcaaaagctaataaatcataacaaatgtgtt 5569227  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 757 - 814
Target Start/End: Complemental strand, 30078147 - 30078090
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcata 814  Q
    |||||||| | ||||||||| ||| |||||||||||||| |||| |||||||||||||    
T  30078147 aacacttgaagttgctaccggcaagagcaaaatcaactttaaaagcttataaatcata 30078090  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 757 - 821
Target Start/End: Complemental strand, 35502433 - 35502369
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatg 821  Q
    |||||||||| |||||||| || | ||||||||||||||||||| ||||||||||||| ||||||    
T  35502433 aacacttgcaattgctacccacgagagcaaaatcaacttcaaaagcttataaatcataacaaatg 35502369  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 757 - 824
Target Start/End: Original strand, 24310075 - 24310142
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgt 824  Q
    |||||||||| |||||||| |||| |||||| ||||||||||||  ||||||| ||||||||||||||    
T  24310075 aacacttgcagttgctaccaacaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgt 24310142  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 752 - 825
Target Start/End: Original strand, 41897685 - 41897758
Alignment:
Q  752 ttgctaacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    ||||||||||||||| ||| | ||||||||| ||||   |||||||||| ||||||||| ||||||||||||||    
T  41897685 ttgctaacacttgcatttgattccgacaaaaacaaagctaacttcaaaagcttataaataatagcaaatgtgtt 41897758  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 7856697 - 7856765
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| ||||||||| ||||||||||  |||||||||||  ||||||| ||||| ||| |||||    
T  7856697 aacacttgcagttgctaccggcaaaagcaaagccaacttcaaaagtttataaaccataggaaacgtgtt 7856765  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 23778456 - 23778524
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| ||||||||  ||| ||||||  |||||||||||  ||||||| |||||||||||||||    
T  23778456 aacacttgcagttgctaccagcaagagcaaagccaacttcaaaagtttataaaccatagcaaatgtgtt 23778524  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 6226881 - 6226949
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||||||| |||||| || ||| |||||| ||||||||||||  ||||||| |||||||||||||||    
T  6226881 aacacttgcagttgctatcggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgtt 6226949  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 23353586 - 23353654
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||| ||||| |||||||||  || ||||||| ||||||||||||||||||||| |||| |||||||||    
T  23353586 aacagttgcaattgctaccggtaagagcaaaaccaacttcaaaaacttataaattatagtaaatgtgtt 23353654  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 756 - 825
Target Start/End: Complemental strand, 10781077 - 10781008
Alignment:
Q  756 taacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    ||||||||||| ||||||||| ||| ||||||| |||||||||||  |||||||  |||| |||||||||    
T  10781077 taacacttgcagttgctaccggcaagagcaaaaccaacttcaaaagtttataaactatagtaaatgtgtt 10781008  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 825
Target Start/End: Original strand, 25031144 - 25031212
Alignment:
Q  757 aacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||| ||||| ||| ||||| ||| |||||| ||||||||||||  ||||||| |||||||||||||||    
T  25031144 aacaattgcagttgttaccggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgtt 25031212  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 782 - 825
Target Start/End: Original strand, 31738111 - 31738154
Alignment:
Q  782 agcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    |||||| ||||||| |||||||||||||||||| ||||||||||    
T  31738111 agcaaagtcaactttaaaaacttataaatcataacaaatgtgtt 31738154  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 825
Target Start/End: Complemental strand, 9539521 - 9539452
Alignment:
Q  756 taacacttgcacttgctaccgacaaaagcaaaatcaacttcaaaaacttataaatcatagcaaatgtgtt 825  Q
    ||||||||||| |||||| || ||| ||||||| |||||||||||  ||||||| || | ||||||||||    
T  9539521 taacacttgcagttgctatcggcaagagcaaaaccaacttcaaaagtttataaaccaaaacaaatgtgtt 9539452  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 660
Target Start/End: Original strand, 47543329 - 47543382
Alignment:
Q  607 tagaaatttgaaacaaaacttaaaattaataagtaatcactaaatatttacatc 660  Q
    ||||| ||| ||||||||||||||||  || |||||| ||||||||||||||||    
T  47543329 tagaatttttaaacaaaacttaaaatctattagtaattactaaatatttacatc 47543382  T

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