View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_low_21 (Length: 350)
Name: NF15317_low_21
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 76 - 214
Target Start/End: Complemental strand, 47710798 - 47710660
Alignment:
| Q |
76 |
ctgatataactatttttgtatgtttgaagaacccaatgatgtcagaattaaaatgaaagctggtagaatctgtgggagtgatgttcaccacctcaaggta |
175 |
Q |
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| T |
47710798 |
ctgatataactatttttgtatgtttgaaggacccaatgatgtcagaattaaaatgaaagctagtagaatctgtgggagtgatgttcaccacctcaaggta |
47710699 |
T |
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| Q |
176 |
gatagtttttctgttacatctgatgcaatattcaatgag |
214 |
Q |
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| T |
47710698 |
gatagtttttctgttacatatgatgcaatattcaatgag |
47710660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 27266449 - 27266326
Alignment:
| Q |
76 |
ctgatataactatttttgtatgtttgaagaacccaatgatgtcagaattaaaatgaaagctggtagaatctgtgggagtgatgttcaccacctcaaggta |
175 |
Q |
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| T |
27266449 |
ctgatatcactatttttgtatgtttgaaggacccaatgatgtcagaattaaaatgaatgctggtggaatctgtgggagtcatgttcactacctcaaggta |
27266350 |
T |
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| Q |
176 |
gatagtttttctgttacatctgat |
199 |
Q |
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| T |
27266349 |
gatagtttttctattacatctgat |
27266326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 22991045 - 22991168
Alignment:
| Q |
89 |
ttttgtatgtttgaagaacccaatgatgtcagaattaaaatgaaagctggtagaatctgtgggagtgatgttcaccacctcaaggtagatagtttttctg |
188 |
Q |
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| T |
22991045 |
ttttgtatgtttgaaggaccccatgatgtcagaattaaaatgaaggctgttggaatctgtgggagtgatgttcactacctcaaggtagatagtttttctg |
22991144 |
T |
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| Q |
189 |
ttacatctga-tgcaatattcaat |
211 |
Q |
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| T |
22991145 |
ttacatctgatttcaatattcaat |
22991168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 23797353 - 23797230
Alignment:
| Q |
89 |
ttttgtatgtttgaagaacccaatgatgtcagaattaaaatgaaagctggtagaatctgtgggagtgatgttcaccacctcaaggtagatagtttttctg |
188 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23797353 |
ttttgtatgtttgaaggaccccatgatgtcagaattaaaatgaaggctgttggaatctgtgggagtgatgttcactacctcaaggtagatagtttttctg |
23797254 |
T |
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| Q |
189 |
ttacatctga-tgcaatattcaat |
211 |
Q |
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| T |
23797253 |
ttacatctgatttcaatattcaat |
23797230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 22991215 - 22991265
Alignment:
| Q |
253 |
ctccaaatggtttcctacataatctgtaattttgattcaagggctacttcc |
303 |
Q |
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| T |
22991215 |
ctccaaatgatttcctacataatctgcgattttgatttaagggctatttcc |
22991265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 23797183 - 23797133
Alignment:
| Q |
253 |
ctccaaatggtttcctacataatctgtaattttgattcaagggctacttcc |
303 |
Q |
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| T |
23797183 |
ctccaaatgatttcctacataatctgcgattttgatttaagggctatttcc |
23797133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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